Carboxydothermus hydrogenoformans: CHY_1650
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Entry
CHY_1650 CDS
T00287
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03030
DNA replication
chy03410
Base excision repair
chy03420
Nucleotide excision repair
chy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHY_1650 (polA)
03410 Base excision repair
CHY_1650 (polA)
03420 Nucleotide excision repair
CHY_1650 (polA)
03440 Homologous recombination
CHY_1650 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chy03032
]
CHY_1650 (polA)
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_1650 (polA)
Enzymes [BR:
chy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHY_1650 (polA)
DNA replication proteins [BR:
chy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHY_1650 (polA)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CHY_1650 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHY_1650 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
HHH_5
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ABB16193
UniProt:
Q3ABL3
LinkDB
All DBs
Position
complement(1480397..1482892)
Genome browser
AA seq
831 aa
AA seq
DB search
MGKVVLVDGNSLLHRAFFALPPLKTTKGEPTGAVYGFLTMLFRVIKDEKPEYLAVAFDIS
RKTFRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSRAF
AGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKG
LMGDPSDNIPGVPGIGEKTALDLIKTYGSVEEVLAHKDELKPKLREKLAEHENLAKISKQ
LATILREIPLEISLEDLKVKEPNYEEVAKLFLRLEFKSFLKEIEPKIKKEYQEGKDLVQV
ETVETEGQIAVVFSDGFYVDDGEKTKFYSLDRLNEIEEIFRNKKIITDDAKGIYHVCLEK
GLTFPEVCFDARIAAYVLNPADQNPGLKGLYLKYDLPVYEDVSLNIRGLFYLKKEMMKKI
FEQEQERLFYEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEE
FNLNSPRQLGVILFEKLGLPVIKKTKTGYSTDAEVLEELLPFHEIIGKILNYRQLMKLKS
TYTDGLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPG
YDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHA
KSVNFGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTT
LFGRRRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLL
LSVHDELVLEVPAEELEEVKALVKGVMESVVELKVPLIAEVGAGKNWYEAK
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagtagtcctggtggatggaaatagtttattacatagagcgttttttgccctt
ccgcccttaaaaactactaaaggagagcctaccggggcggtttacgggtttttaacgatg
ctttttcgggtaataaaagatgaaaaacccgaatatttagcggtagcttttgatattagc
cggaaaacttttcgtaccgagcagtttactgcatacaaagggcaccgcaaagaagccccg
gatgagcttgtaccccagtttgccctggtgcgggaagtattaaaggttttaaatgttccc
tatattgaacttgacggttatgaggccgatgatattatcggccacctatcaagggctttt
gcgggacaaggacatgaagtggtgatttataccgctgaccgggacatgctgcaattggta
gatgaaaaaacggtggtataccttaccaaaaaaggcattaccgaactggttaaaatggat
ttagctgcgattttagaaaactacggcttaaagcctaaacagcttgtggatgttaaagga
ttaatgggagatccctcggacaacatacccggggttcccgggattggggagaaaactgct
ttagatttaattaaaacttatggctcagtggaagaagttttggcccataaagatgagtta
aaacctaaattaagagaaaagcttgccgaacacgaaaatttagcaaaaatatcgaaacaa
ttagctacaatcctgcgggaaataccgttagaaatctccctggaagatttaaaagttaaa
gaacctaattatgaagaagttgctaaattatttcttcgccttgagtttaaaagcttttta
aaagaaatagaaccaaaaataaagaaagaataccaggaaggtaaagatttggtgcaagtt
gaaactgtagaaacggaaggacagattgcagtagtttttagtgatggattttatgttgat
gacggggaaaaaacaaagttttactctttagaccggctgaatgaaatagaggaaatattt
aggaataaaaaaattattaccgacgatgccaaaggaatttatcatgtctgtttagaaaaa
ggtctgacttttcccgaagtttgttttgatgcgcggattgcagcttatgttttaaacccg
gccgaccaaaatcccggcctcaaggggctttatctaaagtatgacttaccggtgtatgaa
gatgtatctttaaacattagagggttgttttatttaaaaaaagaaatgatgaaaaaaatc
tttgagcaggagcaagaaaggttattttatgaaatagaacttcctttaactccagttctt
gctcaaatggagcataccggcattcaggttgaccgggaagctttaaaagagatgtcgtta
gagctgggagagcaaattgaagagttaatccgggaaatttatgtgctggcgggggaagag
tttaacttaaactcgcccaggcagctgggagttattctttttgaaaaacttgggctgccg
gtaattaaaaagaccaaaacgggctactctaccgatgcggaggttttggaagagctcttg
cctttccacgaaattatcggcaaaatattgaattaccggcagcttatgaagttaaaatcc
acttatactgacggcttaatgcctttaataaatgagcgtaccggtaaacttcacactact
tttaaccagaccggtactttaaccggacgcctggcgtcttcggagcccaatctccaaaat
attcccatccggttggaactcggtcggaaattacgcaagatgtttataccttcaccgggg
tatgattatattgtttcggcggattattcccagattgaattaaggcttcttgcccatttt
tccgaagagcccaagcttattgaagcttaccaaaaaggggaggatattcaccggaaaacg
gcctccgaggtgttcggtgtatctttggaagaagttactcccgagatgcgcgctcatgcc
aagtcggtgaacttcggcattgtttatggcattagtgattttggtttaggcagagactta
aagattccccgggaggttgccggtaagtacattaaaaattattttgccaactatcccaaa
gtgcgggagtatctcgatgaacttgtccgtacggcaagagaaaagggatatgtgaccact
ttatttgggcgaagacgctatattcctgagctatcttcaaaaaaccgcacggttcagggt
tttggcgaaaggacggccatgaatactccccttcagggctcggctgccgatattattaag
cttgcaatgattaatgtagaaaaagaacttaaagcccgtaagcttaagtcccggctcctt
ctttcggtgcacgatgagttagttttagaagtgccggcggaagagctggaagaggtaaaa
gcgctggtaaaaggggttatggagtcggtggttgaactgaaagtgcctttaatcgctgaa
gttggtgcaggcaaaaactggtatgaagcgaagtaa
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