Carboxydothermus hydrogenoformans: CHY_1797
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Entry
CHY_1797 CDS
T00287
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CHY_1797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_1797
Enzymes [BR:
chy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CHY_1797
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CHY_1797
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
2-oxoacid_dh
Motif
Other DBs
NCBI-ProteinID:
ABB14223
UniProt:
Q3AB67
LinkDB
All DBs
Position
complement(1608476..1609315)
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AA seq
279 aa
AA seq
DB search
MVRDLVYPEGIYLDEIIAYYSKTWEYLRPYMQGRPFFVKFYPEGVGRESYYVRGKLAHAP
AALVYYEKRINEKTSLLVEDFPTLKWLIEQGCIEMHGLLAKAGQERFPDLLLFDLDPFPP
SGFQECVEVALLIREVLNSYGLEGYPKTSGLMGLHILVPVVPRYKNETLVSIAKFIGSLV
EKAHPQRVSLQDYRAEREGKVHLDYSHNRYGKTIILPYSIRAFAGAGVSTPLTWEEIKSG
KINPLDFNIKTIPHRLKKDGEVWDLFSRQYSLEDLLKLL
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
gtggtaagagacttagtttatcccgaaggaatttatcttgatgaaattattgcttattac
agtaaaacctgggaatatttacggccgtacatgcagggacggcccttttttgtcaaattt
tatcccgaaggggttggcagggaaagttattacgtgcggggaaaacttgcccatgctcct
gctgctttggtttattatgaaaaaagaattaatgaaaaaaccagtttattggtcgaagat
tttcctactttgaagtggctaattgagcagggttgcattgaaatgcacggccttttagca
aaagccgggcaggaaagatttcccgatttgttgctttttgaccttgatccttttcctcct
tccggatttcaggagtgtgtggaagttgccctattaattcgggaagtccttaattcgtat
ggattggagggttatccgaagacttctggattaatgggcttgcatattttagtaccggtg
gttccgcgttataaaaacgaaactctggttagcattgctaaatttatcggaagtctggtg
gaaaaagctcacccgcaaagggtttccctgcaggattaccgggctgaaagggaaggaaaa
gtccacctggattacagccacaatcgctacggtaaaacgattattttgccctatagtatt
cgagcttttgccggagcgggggtttccacacctcttacctgggaagaaataaagagcggt
aagattaatcccctggactttaacattaaaactattcctcatcgacttaaaaaagatgga
gaggtctgggacttattttccaggcagtattctttagaagatttattaaaacttctttaa
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