Carboxydothermus hydrogenoformans: CHY_2187
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Entry
CHY_2187 CDS
T00287
Symbol
rexB
Name
(GenBank) exonuclease RexB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
chy
Carboxydothermus hydrogenoformans
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_2187 (rexB)
Enzymes [BR:
chy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHY_2187 (rexB)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CHY_2187 (rexB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABB14962
UniProt:
Q3AA34
LinkDB
All DBs
Position
complement(1965501..1968773)
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AA seq
1090 aa
AA seq
DB search
MLTIVRGPVGSGKSRYCREEIIKVLKEAPLGPMVLYIVPESATFENEYLLNTREDLPGSF
RLQVLSFSRLALNVVREFKAFFKNSSEFVYQHTLKKILQENKGKLQILQKAADNPGFIED
LLKLFKEFRRYRVKPENLEKASSEIENWMLQQKLKDVYLLYKLYLEKFGEEYTSEGLLEK
FLEYAPKSKFLAGAKVFIDGFYTFTPLELEVIKTLLKTCAEVTVTLPTEYDPGIFNRLYS
EALNLGIKVKELKLEKIERYRASELLHLAQNYYPLLPDPYSGSLENLSLIAAANPLEEME
KAARIIRYLAKFKGYKLSDILVLIPEDGYYISNIKTVFNEYGLPVYVDKGLAFDHHGLYF
LLKGVLGEFNREAAINCLKSGLLNLTADEVFALENYLLSRGLDGEKLVLKEAWEDPNSSY
WESWEKGFGEIISFSQILPLINTYREFSQSLKQLLLKIGVPRRISDENGERFWQAFTNLL
TEIEEVFGAERLNPTTFAEELLAYLAKLSLKTIPKGLDQVRAGGSKRYWTGEARAVIILG
AVEGKFPSPPAAGLIFTEEERAKLKKVGLELSPLIRQRLKEDNFHVFLALTRARERVYVS
YPRVSLTGESFTPALLVDWLKKAFPNLKSEEGSYGNETTPQALTRLLSREMVKVKKNGEL
PFIAQGAFNALLLSKPELITKIARAFATNPGKIKLNAGFKEFLPSKTLSVSRLETYYSCP
LKYFLKYLIKAEEREIFTPEATEIGALLHGAVAEIIKTVREKGQKLSTLLAEDLKTLVYQ
AFTKAQQEYGEKFLATYRGRYFLNRLYLMLFKAIEALAYFEGFTKFTPFGEEIAFGEKER
LKSPVFEVNGEKYTLAGKIDRIDVYENNGKTYLRIIDYKTGSISISLDEVVGGINLQLLT
YLLVASENKELFGENLVPAGAFYFRFQNPMLDEKAEGLSMEELKEEVYKNFRLSGYALKD
EESLKHLDSFYAQNNKFKTVNLRTYKDGRIDNALTPAELEALFTKIKGLITEAIFKISAG
EFSAIPYQLKDATGCRYCSYLEVCRLEEQEKQYRVIPRKKDPEVLLALSGGGVGDEKLDS
RTNAGYHLQG
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
gtgcttacgatagtaagggggccggtgggttccggcaaaagccggtactgccgggaagag
ataatcaaagttttaaaagaagcaccgctggggcctatggtgctgtatatagtgccggag
agcgctacttttgaaaacgagtatcttttaaatacccgggaggatttgcccgggagcttt
cgcctgcaggtgttaagttttagtcgacttgctttaaatgttgtccgggaatttaaagct
ttttttaaaaactcttccgaatttgtttatcagcatacattaaaaaagattttacaggaa
aataagggaaaactacaaattttacaaaaagctgcggataatcccgggtttatcgaagac
cttttaaagttatttaaagagtttcggcgttaccgggtaaaaccggagaatttagaaaaa
gcgtcgtctgaaatagagaattggatgctgcagcaaaaattaaaagatgtttacctgtta
tacaagttatacttagaaaaatttggagaagagtataccagcgagggacttttagaaaag
tttttggaatatgcccctaagagcaagtttttagcgggggcaaaagtgtttattgatggt
ttttatacttttacacctttggagttagaagttattaaaacccttttaaaaacctgcgcc
gaagttaccgtaactttgcctacagaatacgatccggggatatttaataggctttatagc
gaggctttaaatttaggtataaaagtaaaagagctaaaactggaaaaaattgaacgttat
cgagcttcagaacttcttcacctggcccagaattattacccgcttcttcctgatccttac
tccgggtctttagaaaatttaagtttaattgctgctgccaaccctttagaagaaatggaa
aaagcggcccggatcatccgctatcttgccaaatttaaggggtataaactttccgatatc
ctggtattaataccggaagatggctactatatttccaatatcaaaactgtttttaacgaa
tacggtttgccggtatatgtggataaaggccttgcttttgaccaccacggactttatttc
ctgttaaaaggagtgctcggggagtttaaccgggaagcggctatcaattgtctaaaatcc
ggcctattaaatttaaccgccgatgaagtttttgctttggaaaattaccttttaagccgg
ggattggatggtgaaaaattagttttgaaagaggcctgggaggaccccaattcatcgtac
tgggagagctgggagaaaggttttggggaaatcatttctttttcgcaaatactaccgcta
attaacacttaccgggagttcagccagagcttaaaacagctcttattaaaaataggtgtt
ccccgaagaatttccgatgaaaatggtgagcggttctggcaggcctttacgaatttacta
accgagatagaagaagtttttggcgctgaaaggttaaatcctactacctttgcggaagaa
cttttagcatacctggcaaaactttctctaaaaaccatccccaaaggattggaccaggtg
cgggcaggtggcagcaaacgttactggaccggtgaagctagggcggtaattattttggga
gcggtggaagggaaatttccctcaccgccggcagcgggactaatttttaccgaggaagaa
cgggccaagcttaaaaaggtgggattggaactttcaccattaatccgccagcggcttaaa
gaggataattttcacgtatttttagcgctgacccgggcccgggaaagggtttatgtttct
tatccccgggtaagtcttaccggtgaaagttttactccggcgcttttagtagactggcta
aagaaagcttttcccaatttaaaatcggaggaaggatcttacggtaatgaaaccacccct
caggccttaacaagacttctttccagagaaatggtaaaggttaaaaagaacggggagcta
ccttttattgctcaaggagcttttaatgctttactgctaagtaagccggagcttataaca
aaaatcgcccgggcttttgccaccaatcctggcaaaataaagttaaatgccggttttaag
gaatttctcccttctaaaaccctttcggtttcgcgtttggaaacttattatagctgccca
ttaaaatattttttaaaatacctcattaaagccgaagagcgagaaatttttactccggaa
gcaaccgaaattggtgctcttcttcacggggcagtagcggagataataaaaacggtaagg
gaaaaagggcagaagctttcaacccttttagcagaagatttaaaaaccttagtttatcaa
gcttttaccaaagcccagcaagaatacggagaaaaattcctggccacataccggggaagg
tactttttaaaccgtctgtatcttatgttatttaaagctattgaagctcttgcttatttc
gaaggctttactaaatttactccctttggagaagaaatagcttttggggaaaaggaaagg
ttaaaatccccggtttttgaggtcaacggagagaaatatacgttagccggtaaaattgac
cggatagatgtttatgagaacaatggaaaaacctatcttagaataattgattataaaacc
ggctctatatcaataagccttgacgaagtagtgggtgggattaaccttcagcttttaact
tatcttttagtggccagtgaaaataaggaactttttggagaaaatttggtgcctgcggga
gcgttttattttcgctttcaaaaccccatgttagatgagaaggccgaaggtctctcaatg
gaggagttaaaggaagaagtttataaaaattttcgcctgagtggttatgccttaaaggat
gaggaaagcttaaaacatttagatagcttttatgcccagaacaacaagtttaaaacggta
aatttacgaacttataaagacggcaggattgataatgctttaaccccggcggaactggaa
gctctatttaccaaaattaaaggtcttattaccgaagctatttttaaaattagcgccgga
gaattttcggcaataccctatcaattaaaagatgctaccggctgcaggtattgttcttat
cttgaagtgtgccgtttggaagaacaggaaaaacaataccgggtaatacccaggaaaaaa
gatcccgaagtgttgctggcgctttcagggggaggtgtgggggatgaaaaactggacagc
cgaacaaatgcgggctatcacctccaggggtaa
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