Carboxydothermus hydrogenoformans: CHY_2281
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Entry
CHY_2281 CDS
T00287
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHY_2281 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chy03021
]
CHY_2281 (rpoA)
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_2281 (rpoA)
Enzymes [BR:
chy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHY_2281 (rpoA)
Transcription machinery [BR:
chy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHY_2281 (rpoA)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHY_2281 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABB15056
UniProt:
Q3A9U4
LinkDB
All DBs
Position
complement(2059609..2060550)
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AA seq
313 aa
AA seq
DB search
MLEIEKPKIETEELNDRYGRFVIEPLERGYGITLGNSMRRILLSSLPGAAVTSIKIEGVL
HEFSTVPGVVEDVTEIILNIKNLTLKLHGDEEQVLRIEAEGEGVITAKDIIAPPEVEILN
PDLVIAHIAEGGRLFMEMTVARGRGYVPAERNKKGEHVIGVIPVDSIFSPVLKVNFQVEN
TRVGQITDYDKLTLEVWTDGSIRPDEAVSLAARIMVEHLQLFVNLNERATGVEIMVEKEE
DAKEKLAEMPIEDLDLSVRSYNCLKRAGINTVGELIQKTEADMMKVRNLGKKSLEEVISK
LNSMGLSLRKEEE
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgaaattgaaaaaccgaaaattgaaaccgaggagttaaacgaccgttacggccgt
tttgtgattgaacctttggaacgggggtacgggattaccctcggcaactcaatgcggcgg
atacttttatcttccctcccgggagctgctgttacttccataaagattgaaggggtactc
catgaattttcaacggttcccggggtagtggaagatgtaacggaaattatcttaaacatt
aaaaatcttacgctgaagcttcacggggatgaggaacaggttttgagaatcgaagctgaa
ggtgagggtgtcattaccgccaaagatataattgccccaccggaggtagaaattttaaac
cccgaccttgtaatagcccatatagcagagggcggtcgtctttttatggaaatgactgta
gcccggggtcggggttatgtaccggcggagcggaataaaaagggcgagcatgttattggc
gtaataccggtagactccatcttttctccagtgctcaaagtgaacttccaggtagaaaat
acgcgggttggtcagattaccgattatgataagctcaccctggaagtttggaccgatgga
agcattcgacccgatgaggcggtaagccttgccgctcgcatcatggttgagcacctgcag
ctttttgttaacttaaatgaacgggctaccggtgtggaaattatggttgaaaaagaagag
gacgccaaggaaaaattggcggaaatgcccattgaagacctggatttatcggtacgctcg
tataactgcttgaaacgggcaggaatcaatacggtaggcgaactaattcagaagaccgaa
gcggatatgatgaaagttcgcaatttagggaaaaagtcgcttgaagaggttatttccaaa
ctcaactccatgggcctttccttgcggaaagaggaagaataa
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