Carboxydothermus hydrogenoformans: CHY_2317
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Entry
CHY_2317 CDS
T00287
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHY_2317 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chy03021
]
CHY_2317 (rpoC)
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_2317 (rpoC)
Enzymes [BR:
chy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHY_2317 (rpoC)
Transcription machinery [BR:
chy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHY_2317 (rpoC)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHY_2317 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
SpoIISA_toxin
Motif
Other DBs
NCBI-ProteinID:
ABB15562
UniProt:
Q3A9Q8
LinkDB
All DBs
Position
complement(2078498..2081956)
Genome browser
AA seq
1152 aa
AA seq
DB search
MLVLNNFERIKIGLASPDQIRAWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVSYIVIDPGETPLLKKQLLTETEYREAREKYGNAFKAGMGAEAIKELLA
EIDLDELSAELKAEIKESTGQRRIRALRRLEVVESFRKSGNRPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVADGIAHNIKSAKRMVERVKPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSSHNIL
NPKDGKPVVVPTQDMVIGSYYLTVEKPGAKGEGKKFAHPEEVIMAYEEGVIELHTKIKVR
YPIRGEIVELETTPGRIIFNEVIPEELRFINHLVDKKALGKIVTESYRKLGYEKTGYLLD
GLKKLGFHYATKAGLTIGIVDITVPKEKQEILEEADRMVADIEVKYRRGLITEDERYQRV
VDIWNAATEKVTKKLVETLEASQFNHVYMMAKSGARGNIQQIRQLAGMRGLMADPSGRII
DLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVREEDCG
TEDGIYVTDVKDGTDVIEKLEDRILGRVAAEDVVHPETGELLVAKNQEITEEIAEKIVSA
NIKKVKIRSVLTCRTRHGVCTRCYGRNLATNSIVDIGEAVGIIAAQSIGEPGTQLTMRTF
HTGGVAGEDITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETGER
KVYPITYQARIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEGAQLYLLQEVQKVYRMQG
VEINDKHIEVVIRQMLRKVKIEDSGDTDLLPGSLVDIFEFEDENAKVIAKGGKPATAKRV
LLGITKASLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMAR
YRNIMVQAKNEE
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
ttgctggttctaaataactttgagcgtattaagattggtcttgcatctccggatcaaatc
cgtgcctggtcccatggagaggttaaaaagccggaaacaataaattaccggactctaaaa
ccggaacgggatggacttttttgcgaaagaatatttggccctaccaaagactgggagtgt
cactgcggtaaatataaacgggttcgttataagggagtcgtctgtgaccgctgcggggtc
gaagtaactcgttcaaaagtgcggcgggaacggcttggccatattgagcttgctgctccg
gtatcgcatatctggtattttaaagggattcccagtcggatgggccttttactggatatg
tctccccgttccctggaaaaagttttgtactttgtttcgtacatcgtgattgaccccggg
gaaactccccttcttaaaaagcagttgctgaccgaaacggagtatcgggaagcccgggaa
aagtacggcaatgcttttaaagcgggaatgggagcagaagcgataaaagagcttttggcg
gaaatagatttagatgaactttccgccgagctcaaggcggagattaaagaatcaaccgga
cagcggcggatcagagcactccgccgattggaagttgtcgagtcgtttagaaaatccggc
aaccggccggaatggatgattttagatgttattccggttattcctccggaactgcggccg
atggtccagttagacggtggccggtttgccacgtcggacttaaatgacctgtaccggcgg
gtaataaaccgtaacaaccgcttaaaaaggcttctggaattaggggcaccggacatcatt
gtccggaatgaaaagcgcatgctgcaggaagcggtggatgctcttatcgataatggccgg
cgtggccgtccggtaacgggacccggaaaccggcccttaaagtccctgtcggatatgtta
aagggtaagcaggggcgtttccgccaaaacctattgggtaagcgggtggactattccggt
cgttcggttatcgtggttggcccggaattgaagttgcaccagtgcggtttgccaaaggaa
atggctttagagttgtttaaaccgtttgttatgaaaaaattagtggccgacggtattgct
cacaacattaaaagtgccaagcgcatggtggagcgggtcaaacccgaggtttgggatgtc
ctggaagaggtaattaaagaacatccggtgcttttaaaccgggcgcctaccttgcaccgt
ttgggaattcaggcttttgaaccggttctggtggaaggtagggcaatacaaattcacccg
ctggtttgtaccgcttacaacgctgacttcgatggcgaccaaatggcggttcacgtgcct
ctttcggcggaagcccaggcggaagctcgacttttaatgctttcttcccacaatatcttg
aaccctaaagatggaaagcctgtagtcgtaccgactcaggatatggttattggcagttac
tacctgacggtagaaaagcccggggctaaaggtgaaggcaagaaatttgcccatccggaa
gaagtaataatggcttatgaagaaggggttatcgagcttcacaccaaaataaaagttcgc
tatcccatacggggagaaatagtggagttagagaccactccgggaaggataatatttaat
gaggtaattcccgaagagttaagatttataaatcacttagttgataaaaaagccctggga
aaaattgttaccgaatcctatagaaagcttggctatgaaaaaaccggctacttgttagac
ggtcttaaaaaacttggattccattatgcaacaaaggccggtcttaccattggtatcgta
gatattaccgttcccaaagaaaagcaggaaattttagaagaagcggaccggatggtggcg
gacattgaagtcaagtaccgccggggtttaattaccgaagatgaacgttatcagcgggtg
gtagatatctggaatgcggcaaccgaaaaggtaacgaaaaaactggtggaaaccctggaa
gcttcccagtttaaccacgtttatatgatggccaaatccggtgcccggggtaacattcag
cagattcgccagttagccggaatgcggggattgatggccgatccttccggaagaatcatt
gacctgccgattaaagctaatttccgggaagggttaacggtattagaatactttatttcc
acccacggagcacggaaaggattggcggatacggcgcttagaactgccgactccggttac
cttacccggcgactggttgacgtttgccaggatgttatagtccgggaagaagattgcggt
accgaagatggtatttatgtaaccgatgtgaaagacgggactgatgttattgaaaaactt
gaagatagaattttggggagagtggctgcggaagatgtagtccatccggaaacgggcgaa
ttactggtcgcgaaaaaccaggaaattactgaagaaatcgctgaaaaaattgtttcggca
aatattaagaaggttaaaatccgttccgtattaacctgtcgcactcgccacggggtttgc
acccggtgttacggtcgaaatcttgctaccaacagcatagtagatatcggcgaagcggta
ggaattattgccgcgcaaagtatcggagaaccgggtacccagcttaccatgcggaccttc
cataccggtggtgttgccggtgaggatattacccagggtttaccgcgggtcgaagaactg
tttgaagcccggagacccaagggccaggcgattattaccgaaattgatggtgtggttgag
gttcgggataacaaaggacgccgggaaattgaggtcataaatcaggagaccggagaacgc
aaggtatatcctataacttatcaagcacgcatcaaagtccagaccggagataaagtatat
gccggggacgaactaacggaagggcctattaacccccatgacttaattaaagttaaaggt
atcgagggggctcagctttatctcctccaggaagtgcagaaagtttaccggatgcagggt
gtggaaattaacgataagcatattgaggtagttattaggcaaatgctaagaaaggtaaaa
attgaggattccggtgataccgaccttttaccgggaagcctggtggatatttttgaattt
gaagatgaaaatgctaaagttattgcaaaaggtggaaaaccggcaaccgctaagagggta
ctgctggggataactaaggcttcgctggcaactgactcgttcttatcggcggcatcgttc
caggaaaccaccagggtgcttaccgaagcggctattaaaggtaaggttgatccgctttta
ggccttaaggaaaatgtgattatcggtaagttaatacctgcgggtacgggtatggcccgt
taccgcaatatcatggttcaggccaagaatgaagagtaa
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