Calycomorphotria hydatis: V22_21130
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Entry
V22_21130 CDS
T09810
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chya
Calycomorphotria hydatis
Brite
KEGG Orthology (KO) [BR:
chya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chya03016
]
V22_21130 (rtcB)
Enzymes [BR:
chya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V22_21130 (rtcB)
Transfer RNA biogenesis [BR:
chya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V22_21130 (rtcB)
Prokaryotic type
tRNA splicing ligases
V22_21130 (rtcB)
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Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDT64870
UniProt:
A0A517T915
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All DBs
Position
2463659..2465047
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AA seq
462 aa
AA seq
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MNNSQLRKIGVPDSCLNAAQEVIKLLAAEGNLRGRNMKKDFGTVIASPEEWLNDPHFGSF
AEAVKEEAEFTPPEPIDYETWGTDIDDGAHHQMRDACHVPSAFGAALMPDAHVGYGLPIG
GVLATEGTVIPYAVGVDIACRMKLSILDMPVESLTKKSDDFEKALEGGTRFGVGSVHEKK
QEHDVMDKDWTITRVTRENKDKAWKQLGTSGSGNHFVEFGICSLPVRDEELNLDAGEYIA
LLSHSGSRGAGASVCSTYSNIARANLPKRYEHIGRLAWLDLDSQAGQEYWEAMNLMGEYA
AANHAVIHRLVTKLLGAEVLAGVENHHNFAWKEIHDGKEVVVHRKGATPAGAGVLGVIPG
SMADPAYIVRGLGKKESLHSASHGAGRRMSRKKAKDKYNFKAVKNDLAAKGIKVLAAGAD
EVPGVYKDIRAVMREQEDLVDIVGQFQPKLVKMCGDGSKAED
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaacaattcccaactccgcaaaatcggcgttcccgatagttgtctgaacgcggcccag
gaagtcatcaaactgctggctgccgaggggaacctgcgcggtcgtaacatgaagaaggat
ttcggtacggtcatcgcttcgccggaagaatggctcaacgatccgcacttcggttccttc
gcggaagcggtgaaggaagaagcggaattcacgccgccggaaccgatcgactacgaaacc
tggggaaccgacatcgatgatggtgctcatcaccagatgcgcgatgcctgtcacgtacca
tcggcgttcggtgctgcgctcatgcccgatgcccacgttggctacggtcttcccatcggt
ggtgttctcgcgacggaaggcaccgtcattccctacgccgtcggtgtcgatatcgcctgc
cgcatgaagctgtcgattctcgacatgcctgtcgaatcgctgaccaagaagtcggacgac
ttcgaaaaggcgttggaaggcggaacccgtttcggcgtcggttctgtccatgaaaaaaag
caggagcacgacgtgatggacaaggattggaccatcacgcgcgtgacccgcgagaacaag
gacaaggcatggaagcagttgggaacttccggctcggggaatcacttcgtcgagttcgga
atctgctcgctgccggtgcgtgacgaggaactgaacctcgatgcgggcgaatacattgcg
ctcttgagtcacagtggtagccggggtgcgggggcgtcggtctgttcgacttacagcaac
atcgcccgtgccaacctgccgaagcggtacgaacacatcggtcgactcgcctggcttgac
ctcgattcacaggcggggcaggaatactgggaggcgatgaacctgatgggcgaatacgcc
gccgccaatcacgccgttattcatcggctggtcaccaagctgctcggtgcggaagtgctc
gcgggcgtggagaaccatcacaacttcgcgtggaaggaaatccatgacggcaaggaagtg
gtcgtgcaccgcaagggggcgactccggcgggagcgggcgtgctcggcgtgatccccggc
tcgatggccgacccggcctacatcgttcgcggcctcggcaagaaagaatcactccactcc
gccagccacggagccggccgccgcatgtcccgcaaaaaagccaaggacaagtacaacttc
aaagccgtgaaaaacgacctcgccgccaaaggcattaaggtcctcgccgccggcgcggat
gaagtcccgggagtttataaggacattcgagccgtcatgcgcgaacaggaagacctggtc
gatatcgtcgggcagtttcagccaaaactagtgaagatgtgcggtgatgggagcaaagcc
gaggactga
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