Calycomorphotria hydatis: V22_30450
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Entry
V22_30450 CDS
T09810
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chya
Calycomorphotria hydatis
Pathway
chya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V22_30450 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chya03019
]
V22_30450 (rhlE)
Enzymes [BR:
chya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V22_30450 (rhlE)
Messenger RNA biogenesis [BR:
chya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V22_30450 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DEDD_Tnp_IS110
AAA_22
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QDT65784
UniProt:
A0A517TBN0
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All DBs
Position
3627335..3628645
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AA seq
436 aa
AA seq
DB search
MKFSDLGLHELVLRVTEPLGYVCPTPIQAEAIPVILTGRDVVGCAQTGTGKTAAFTLPML
CRLIESLPEKPIEQQAAPKDNRDSKGRRKSNRPPSRPGKPQALVLSPTRELAAQIKESLI
RYGKHVPLRYEVVSGGVSYVPQIKGLNRGVDVLVATPGRLIDLMEKGHVDLSETKILVLD
EADQMLDMGFLPALKQIVSAVPAERQTVMFSATMPPKIRRLADEWLTDPTSIQVAPVATP
AERIVQRVHMVDTSQKSAMLLRYLKETPRNRTIVFSRTKHGADKLVKIIQQDGFRAAAIH
GNKSQNARTRTLRQFKGNSPPILIATDIAARGLDINDVSHIINYDLPDTPENYVHRIGRT
ARAGAEGTAISFCARGERKLLHAIERLMNCRIEVEQGGDRAEPDTSKRHKEPLRAKSEPL
KPKRRRRRPSKRAVKN
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttcagatcttggcttgcacgaactggttctgcgggtcacggaaccgctgggt
tatgtttgtccaacccccatccaggcagaggcaatcccagtgatcctcacgggacgagat
gtcgtcggctgtgcccaaaccggtacaggtaagacagcggcatttacgctcccgatgctc
tgccgattgatcgagtcgttgcccgagaagccgatcgaacagcaggccgcccccaaagac
aaccgcgactctaaaggccgtcgtaaatcaaatcgacctccatcacgcccggggaaacca
caggcattggttttgtcgccgacacgcgaactcgccgctcagattaaggaaagcctcatt
cgctacggcaagcacgtcccgctgcggtatgaggtggtctccggcggggtttcctacgtg
ccacaaatcaaaggtttgaatagaggtgtggacgtactggtggccactcccggtcgactc
atcgacctgatggaaaaagggcacgttgatctctcagaaacaaaaattctggtcctcgac
gaagcggatcaaatgctggatatgggtttcctgcccgcgctgaaacaaatcgtctccgca
gttcctgccgaacgacaaaccgtcatgttctccgccaccatgcccccaaaaattcgcagg
ctggcagatgaatggctgactgaccccaccagcattcaggttgcccctgtcgcgacccct
gcggagcgaatcgtgcagcgagttcacatggtcgacacaagtcagaagtctgccatgctg
cttcgctacctgaaagagacaccacgtaatcgcacgattgtgttcagtcgcaccaagcat
ggtgctgataaactcgtgaaaatcattcagcaggatggttttcgtgcggccgcgattcat
ggcaacaaaagccagaatgcacggacacgaacgctgagacaattcaaaggcaacagcccc
ccgattctgatcgcgaccgatatcgccgcccgaggactcgatattaatgacgtatcacac
atcattaattacgatcttccggatactccggaaaactatgtgcatcggatcggacgaacc
gcacgagccggtgcggagggcacggcgatttcgttctgtgctcgtggcgaacgaaagttg
ctgcatgcgatcgaacgactgatgaactgccgcattgaggtagagcagggcggagatcgt
gccgagccggatacatccaaacgtcacaaagaaccattaagggcgaaatctgaacccttg
aagccgaaacgtagacgtcgccgtccgtcgaagcgagctgttaagaactga
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