KEGG   Calycomorphotria hydatis: V22_34760
Entry
V22_34760         CDS       T09810                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
chya  Calycomorphotria hydatis
Pathway
chya03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:chya00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    V22_34760
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chya03021]
    V22_34760
   03019 Messenger RNA biogenesis [BR:chya03019]
    V22_34760
Transcription machinery [BR:chya03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     V22_34760
Messenger RNA biogenesis [BR:chya03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     V22_34760
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA_25 AAA_22 Spore_III_AA NACHT S1CSD-TOTE-2 ATPase_2
Other DBs
NCBI-ProteinID: QDT66211
UniProt: A0A517TCW3
LinkDB
Position
complement(4130601..4132232)
AA seq 543 aa
MGSASPSESTDRKTPRRRTRHKTKSESEDVSTSTATADNSDDFGDGIVFEEVPSLPKRRK
KPATRKKKEVEESFDDDSGSGDSGDVVSEAPRESYSEDSAPSNSSSDEGSDQDGDGQQRR
RRRRRRRGPGGGNNGGHNNQRGGQQNNRGGGGRGQRPNQRRNRMQSSGPPPEEVIGDLEG
ILELHPKGYGFLRDPSNNYCSRDTDAFVSSSLIEKYKLREGVLIKGEVGPGSKGQGPRLK
TIESVDGRDPEDYAQIKHFDHLTPINPFEQIVLERGASPVTVRVMDLLTPIGKGQRALLV
APPRSGKTMLLQDIAQSVTENHPEVHLIMLLIDERPEEVTEMRRCVTGEVVASSLDREVE
SHVRVSQLVIERAKRLAEEGKDVLVLLDSITRLARAFNKWVGNSGRTGTGGLDIRALDIP
KKLFGTARRFEEGGSLTVVGTALVETGGRMDDAIFQEFKGTGNMELVLSRELADRRIWPA
IDIAQSGTRREEKILAPEVLDGVTMLRRSLISLSPVQAMEDLTRTLGRFPSNADFISRVK
EIL
NT seq 1632 nt   +upstreamnt  +downstreamnt
atgggctcggccagtccttcggagtcgacagatcgtaaaactccacggcgtcgtacgcgt
cacaaaactaaaagtgaatcggaagatgtttcgacttccactgcgaccgctgacaacagc
gacgactttggcgatggcattgtctttgaagaagtgccctccctgccgaaacgccgcaaa
aaaccggcgaccagaaagaaaaaggaagtcgaagaatcatttgatgatgattccggcagc
ggcgatagcggcgatgttgtgagtgaggctcctcgcgagtcgtactcagaagactccgct
ccgtcgaattcctcttcggacgaaggttccgatcaggacggggatggtcagcagcgtcgc
cggcgtcgccgtcgccgacgtggtcccggtggtggaaataacggcggtcacaacaatcaa
cgtggtggccagcagaacaatcggggcggaggaggtcgtggtcagcgacccaatcagcgt
cgtaaccgcatgcagtcctcgggaccgcctcctgaagaagtcattggagatctcgaaggc
atcctcgagttgcaccccaaggggtacggcttcctgcgtgatcccagcaacaactactgc
tcgcgagacaccgacgcctttgtttccagttcgctgattgaaaagtacaaattgcgcgaa
ggcgtgctgatcaaaggcgaagtcggccccggttccaaagggcaggggccgcgtctgaaa
acgatcgagtcggtcgacggtcgcgatcccgaagattacgcgcagatcaaacacttcgat
cacctcactccgatcaacccatttgagcagatcgtgctcgaacgtggtgcatcgcccgtt
acggtgcgagtcatggatttactcaccccgattggaaaggggcagcgggcactgcttgtt
gctcctccacgatcgggtaagacgatgctcctgcaggacatcgcccagtccgtgactgaa
aaccatccggaagttcacctgatcatgttgttgatcgatgaacgcccggaagaagtgacc
gaaatgcgtcgctgcgtgaccggtgaagtagttgccagttcgcttgaccgtgaagtggaa
agccacgttcgcgtcagtcaacttgtgattgaacgggccaagcgtcttgccgaagaaggt
aaagacgtgctcgtgctgctcgacagcatcacgcgactcgcccgtgccttcaacaaatgg
gtcggcaactcgggacggaccggaaccggtggtctcgacattcgggcgctagatattccc
aagaagctcttcggtaccgcacgtcggttcgaagaaggtggctcgctgaccgtggttggt
accgcgcttgtagaaaccggtggtcgcatggacgatgcgatcttccaggagttcaaggga
accggcaacatggaactcgtgctcagccgcgagttggccgatcgtcgcatctggccagcg
atcgacattgctcaatcgggcacacgacgggaagagaagattctcgcccccgaagttctc
gatggcgtcacgatgctgcgtcggagtttgatctcactgtctccggtccaggcgatggaa
gatctcacacgcacgttgggccgtttcccatcgaacgctgactttatctctcgcgtgaaa
gagattctgtag

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