Calycomorphotria hydatis: V22_34760
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Entry
V22_34760 CDS
T09810
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
chya
Calycomorphotria hydatis
Pathway
chya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V22_34760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chya03021
]
V22_34760
03019 Messenger RNA biogenesis [BR:
chya03019
]
V22_34760
Transcription machinery [BR:
chya03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
V22_34760
Messenger RNA biogenesis [BR:
chya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
V22_34760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_22
Spore_III_AA
NACHT
S1CSD-TOTE-2
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QDT66211
UniProt:
A0A517TCW3
LinkDB
All DBs
Position
complement(4130601..4132232)
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AA seq
543 aa
AA seq
DB search
MGSASPSESTDRKTPRRRTRHKTKSESEDVSTSTATADNSDDFGDGIVFEEVPSLPKRRK
KPATRKKKEVEESFDDDSGSGDSGDVVSEAPRESYSEDSAPSNSSSDEGSDQDGDGQQRR
RRRRRRRGPGGGNNGGHNNQRGGQQNNRGGGGRGQRPNQRRNRMQSSGPPPEEVIGDLEG
ILELHPKGYGFLRDPSNNYCSRDTDAFVSSSLIEKYKLREGVLIKGEVGPGSKGQGPRLK
TIESVDGRDPEDYAQIKHFDHLTPINPFEQIVLERGASPVTVRVMDLLTPIGKGQRALLV
APPRSGKTMLLQDIAQSVTENHPEVHLIMLLIDERPEEVTEMRRCVTGEVVASSLDREVE
SHVRVSQLVIERAKRLAEEGKDVLVLLDSITRLARAFNKWVGNSGRTGTGGLDIRALDIP
KKLFGTARRFEEGGSLTVVGTALVETGGRMDDAIFQEFKGTGNMELVLSRELADRRIWPA
IDIAQSGTRREEKILAPEVLDGVTMLRRSLISLSPVQAMEDLTRTLGRFPSNADFISRVK
EIL
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgggctcggccagtccttcggagtcgacagatcgtaaaactccacggcgtcgtacgcgt
cacaaaactaaaagtgaatcggaagatgtttcgacttccactgcgaccgctgacaacagc
gacgactttggcgatggcattgtctttgaagaagtgccctccctgccgaaacgccgcaaa
aaaccggcgaccagaaagaaaaaggaagtcgaagaatcatttgatgatgattccggcagc
ggcgatagcggcgatgttgtgagtgaggctcctcgcgagtcgtactcagaagactccgct
ccgtcgaattcctcttcggacgaaggttccgatcaggacggggatggtcagcagcgtcgc
cggcgtcgccgtcgccgacgtggtcccggtggtggaaataacggcggtcacaacaatcaa
cgtggtggccagcagaacaatcggggcggaggaggtcgtggtcagcgacccaatcagcgt
cgtaaccgcatgcagtcctcgggaccgcctcctgaagaagtcattggagatctcgaaggc
atcctcgagttgcaccccaaggggtacggcttcctgcgtgatcccagcaacaactactgc
tcgcgagacaccgacgcctttgtttccagttcgctgattgaaaagtacaaattgcgcgaa
ggcgtgctgatcaaaggcgaagtcggccccggttccaaagggcaggggccgcgtctgaaa
acgatcgagtcggtcgacggtcgcgatcccgaagattacgcgcagatcaaacacttcgat
cacctcactccgatcaacccatttgagcagatcgtgctcgaacgtggtgcatcgcccgtt
acggtgcgagtcatggatttactcaccccgattggaaaggggcagcgggcactgcttgtt
gctcctccacgatcgggtaagacgatgctcctgcaggacatcgcccagtccgtgactgaa
aaccatccggaagttcacctgatcatgttgttgatcgatgaacgcccggaagaagtgacc
gaaatgcgtcgctgcgtgaccggtgaagtagttgccagttcgcttgaccgtgaagtggaa
agccacgttcgcgtcagtcaacttgtgattgaacgggccaagcgtcttgccgaagaaggt
aaagacgtgctcgtgctgctcgacagcatcacgcgactcgcccgtgccttcaacaaatgg
gtcggcaactcgggacggaccggaaccggtggtctcgacattcgggcgctagatattccc
aagaagctcttcggtaccgcacgtcggttcgaagaaggtggctcgctgaccgtggttggt
accgcgcttgtagaaaccggtggtcgcatggacgatgcgatcttccaggagttcaaggga
accggcaacatggaactcgtgctcagccgcgagttggccgatcgtcgcatctggccagcg
atcgacattgctcaatcgggcacacgacgggaagagaagattctcgcccccgaagttctc
gatggcgtcacgatgctgcgtcggagtttgatctcactgtctccggtccaggcgatggaa
gatctcacacgcacgttgggccgtttcccatcgaacgctgactttatctctcgcgtgaaa
gagattctgtag
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