Croceimicrobium hydrocarbonivorans: H4K34_02995
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Entry
H4K34_02995 CDS
T07152
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H4K34_02995 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chyd03021
]
H4K34_02995 (rpoB)
03400 DNA repair and recombination proteins [BR:
chyd03400
]
H4K34_02995 (rpoB)
Enzymes [BR:
chyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H4K34_02995 (rpoB)
Transcription machinery [BR:
chyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H4K34_02995 (rpoB)
DNA repair and recombination proteins [BR:
chyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H4K34_02995 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
QNR24828
UniProt:
A0A7H0VGI0
LinkDB
All DBs
Position
complement(663168..666962)
Genome browser
AA seq
1264 aa
AA seq
DB search
MERVNFASIKNHFDYPDFLAIQIQSFKDFFQLETKAADRADEGLFRTFSENFPITDSRNQ
FVLEFIDYFIDPPRYSEEECIERGLTFSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIP
YMTPRGTFVVNGAERVIVSQLHRSPGVFFGQSYHANGTKLYSARVIPFKGSWIEFATDIN
SVMYAYIDRKKKLPLTTLLRAIGYERDKDILEIFDLAEEVKVTKTGLKKVAGRKLAARVL
KTWIEDFVDEDTGEVVSIERNEVVLDRDTILEKEHIEEILDADVQTILLHKEDIEASEYA
IIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSEQRYSLGEVGRYRI
NKKLGLEIESDVQVLTKEDILSIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQMSNQFG
VGLARMARTIKERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEVT
HKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSMSVYAKVNKMG
FLETPYREVKEGKIDFAQDPIYLSAEEEEQKVIAQANAPVKDSGEFVNDRVKVRDEADYP
LVEPEKVDYMDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAPIVGTG
LEKRVARDSRVLVNAEGDGVVEYVDAQKIIINYDRTEEERLVSFEDDFKTYNLVKFRKTN
QSTCINIQPIVKKGERVSEGQVLCEGYATESGELALGRNMLVAFMPWKGYNFEDAIVISE
RVARDDVFTSLHIDEYTLDVRDTKLGVEELTADIPNVSEEATKDLDENGLIRIGAEVKPG
DILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIDKKLFALARKD
KKTRLQDKEEIEKLDQEFNMQVEVLRQKFLEKLSILVAGKTSQGVENDLNEVVIPKGTKF
TQKILNGIDDYTRVTGGVWTTDTDKNELIATLLHNFKIKYNDYLGAYKRQKFTISVGDEL
PSGIVKMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLG
VPSRMNIGQIYETVLGWAGKRLGRKFATPIFDGASLDEINKYTDEAGVPRFGHTHLYDGG
TGERFHQAATVGVIYMIKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVW
ALEAFGASNILREILTVKSDDVVGRAKTYETIVRGDAMPEPGIPESFNVLLHELNGLGLK
VTLD
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagtcaattttgcatccatcaagaatcatttcgattaccccgattttctggct
attcagattcagtcttttaaagacttcttccagttggaaaccaaggcggccgatcgagct
gatgaaggtttattccgaaccttttctgaaaattttccgattaccgactcgcgtaatcaa
ttcgtactggagtttatcgattactttatcgatcctccccgctactctgaagaagagtgt
atagagcgcggacttactttcagtgttccactgaaggctcgtctgaaactgtactgtaca
gatcctgagcacgaggatttcgaaactatcgtgcaggacgtttacttaggaacaatccct
tatatgacccctcgtggtaccttcgttgtgaatggtgcagagcgagttattgtttctcag
ttacaccgttctcctggcgtattctttggtcaaagctatcatgctaatggtaccaaatta
tattcggctcgtgtaattcctttcaaaggatcatggatcgaattcgccaccgatatcaac
tcggtgatgtatgcctacattgatcgtaaaaagaaattaccgcttactaccctcttgcgt
gcaattggctacgagcgtgataaagatattcttgaaatcttcgaccttgctgaagaagtt
aaggttaccaaaacaggtttgaagaaagtggctggtcgcaaattggcggctcgtgtgctt
aaaacctggattgaggatttcgtagatgaagatacaggtgaagtagtttctatcgagcgt
aacgaagttgtactcgatcgtgataccatccttgaaaaagagcatatcgaagaaattctc
gatgctgatgtgcaaactatccttctgcacaaagaggacatcgaagcttcagaatatgct
attatccataataccttacaaaaggaccccactaactctgagaaagaagcagtggagcac
atctatcgtcaactgcggaatgcggagccgccagacgaggaaactgcccgtggtattatc
gataagctcttcttctctgagcaacgttatagcttaggtgaagtagggcgttaccgaatt
aataagaagttaggtctggaaatcgaaagcgatgttcaggtattaactaaagaagatatt
ctcagtattgtaaaatacttgatcgaattgatcaactctaaagcagaaattgatgatatc
gatcacttgagtaaccgtcgtgtacgtaccgtaggtgagcaaatgtctaaccagtttggt
gtaggtcttgctcgtatggctcgtactattaaagaacggatgaacgttcgtgacaatgag
gtatttactccgatcgatttgattaacgcgaagactctttcttcagtaatcaactctttc
ttcggtaccaaccagttgtctcagttcatggaccaaaccaaccctctggcagaggttacg
cacaagcgtcgtctttctgcattaggacctggtggtctttctcgtgagcgtgccggtttt
gaggttcgagacgtacactacacccactatggtcgtttgtgtccgattgaaactccggaa
ggaccaaacattggtttgatttcttctatgtcggtttacgccaaggtgaacaaaatgggc
ttcttggaaactccttaccgtgaagttaaagaaggtaagattgatttcgctcaggatcct
atttacttaagtgctgaagaagaagaacagaaggtaattgctcaggccaatgcacctgtt
aaggacagcggtgagtttgtgaacgaccgagttaaggttcgtgatgaagctgactatcct
ttggtagagcctgagaaagtggattatatggacgtggctcctaaccagattgcctccatt
tccgcttctttgattcctttcttggagcatgatgatgcgaaccgtgccttgatgggatca
aacatgatgcgtcaggctgttccattacttcgtcccgaggctcctatcgtaggaaccggt
cttgagaagcgcgtggctcgtgatagccgtgttcttgttaatgctgaaggcgacggtgta
gtagagtatgtagatgctcaaaagattattatcaattacgatcgtacggaagaagagcgc
ctggtgagctttgaagatgacttcaaaacttacaacctggtaaaattccgtaagacaaac
caaagtacttgtatcaatatccaaccgatcgttaagaaaggtgagcgggtatcagaaggc
caggtattatgtgagggttatgctaccgaaagcggtgaattagcacttggacgtaatatg
ttggtagccttcatgccttggaaaggttacaactttgaggatgcgattgtaatttcagag
cgcgttgcccgcgatgatgtcttcacctctttgcatatcgacgaatacactctagatgtt
cgtgataccaaattgggagtagaagaactaaccgccgatattcctaacgtaagtgaggaa
gctactaaagatcttgatgaaaacggtttaatccgcatcggggctgaagtgaagcctggc
gatattctgattggtaagattacgcctaaaggtgaatctgatcctactccagaagagaaa
ttattacgtgcaatcttcggtgataaagccggtgatgttaaggatgcctctttgaaagct
tcaccttcattgaatggtgtggtgattgacaagaagctctttgccttagctcgtaaagac
aaaaagactcgtttacaagacaaagaagagatcgagaaattagatcaggaattcaacatg
caagttgaagtactgcgtcagaaattcctcgaaaaactttcaatcctggttgctggtaaa
accagtcagggtgttgaaaacgatctgaatgaagtagtaattccaaaaggaaccaagttt
actcagaagattctaaacggaatcgatgattatactcgtgtgactggtggagtttggact
accgatactgataaaaatgagttgatcgcaaccttgttgcacaactttaaaattaagtac
aacgattacctgggtgcttacaagcgtcagaagtttaccattagcgtgggagacgaatta
ccttcaggtattgtgaaaatggccaaagtttatatcgctaaaaagcgtaagctgaaagta
ggtgataagatggcaggtcgtcacggtaacaaaggtattgtagcacgtattgtacgtcaa
gaggatatgccattcctcgaagacggtactccggtagatatcgtactgaatccattgggt
gtaccttcacggatgaacatcggtcagatttatgagaccgtattaggatgggccggaaaa
cgcttgggtcgcaaatttgctactccgattttcgatggtgccagcttagacgagatcaat
aaatacactgatgaggctggagttccacgcttcggacatacccacctgtatgatggtggt
accggagagcgtttccaccaggcggctaccgtaggggtgatctatatgatcaaattaggt
cacatgatcgacgacaaaatgcacgctcgttctattggaccttactccctcattacacaa
cagccattgggtggtaaagctcagtttggaggtcagcgtttcggagaaatggaggtttgg
gcacttgaggccttcggtgcttccaatatcctgcgcgagatcctaactgttaagtcggac
gacgttgttggacgtgccaagacttacgaaaccatcgttcgtggtgatgcaatgccagag
cccggaattccggagtctttcaacgtattgttgcatgaactgaatggattgggactgaaa
gttaccctcgattaa
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integrated database retrieval system
