Croceimicrobium hydrocarbonivorans: H4K34_03975
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Entry
H4K34_03975 CDS
T07152
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H4K34_03975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chyd03400
]
H4K34_03975 (mfd)
Enzymes [BR:
chyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H4K34_03975 (mfd)
DNA repair and recombination proteins [BR:
chyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H4K34_03975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
UB2H
ZNF380_CC
Ribosomal_L21e
Motif
Other DBs
NCBI-ProteinID:
QNR25012
UniProt:
A0A7H0VH14
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All DBs
Position
865095..868424
Genome browser
AA seq
1109 aa
AA seq
DB search
MAYKASNFLERYSDDQRIKLILDQWSKADPQKLEIRGISGSLGAIALAQSFQQSEIPHLI
ILNDKEQAAYFLNDLEGLIGEKDVLFYPASYRRPYDTEETDNANVLLRAEVLNRLNSRKK
PAILVSYADALFEKVVTRKSLSAHTFSIRTGDELSIDFLNETLFEYQFERVDFVIEPGQF
SVRGGIVDVYSFSHDQPFRIEFFDDEIESIRTFDIESQLSIDQVKRIQLVPNVENKVLME
SRESFLEYIGPKTIVWTQNSNLIGSKLQDLYEKALELFREINSDISRSEPAELYINKELF
HQHLKNFHQLEWQADAGFEANLKIEFNSKPQPSFNKKFELLVDDLRKHSEEDYDNFLLCL
NQTQVERFDAIFEDIGKEVKFQPIVHTLHEGFIDQEAKTLVYTDHQIFERYQKFRLRTGY
EKRQAVSLKELTALQVGDYITHIDHGIGEFGGLQKIEVNGKHQEAIKLIYSGGDVLYVSI
HSLHKISRYNGKEGTVPSVHKLGSGVWQKTKSKAKTRVKKVAFDLIKLYAKRKATHGFQF
SPDNYLQHELEASFIYEDTPDQESATQAIKQDMEAQTPMDRLICGDVGFGKTELAVRAAF
KAVCDSKQVAVLVPTTILAFQHHKTFSKRLADFPCRVEYINRFRSRKEQTEILKDLEDGK
VDIIIGTHRLVGKDIKFKDLGLLVIDEEQKFGVSVKDKLKNLKVNVDTLTLTATPIPRTL
QFSLMQARDLSVMTTPPPNRHPIETQLIPFNEEIIRDSLRYELSRGGQVFFIHNRVENIK
EVAGMLQRLIPDAKMGIGHGQMEGKKLEQLMLQFIDGEFDILVATSIIENGLDVPNANTI
IINNAQNIGLSDLHQMRGRVGRSNKKAFCKLITPPLSAMSDEARKRMQAIEKFSDLGSGF
HIAMRDLEIRGAGDLLGAEQSGFINDIGFDTFQKILAEAIEELKETEFKDLYAEELKNKE
SISDTLLDTDLEILIPDQYVNKVDERLKLYQELDQLRTEAEIETYARDLADRFGPIPREV
DELFDSIRLRRLGQKIGFEKVVLKQERLLCYFTSDQESPYFQSDRFQKVLLYLKSAPQAQ
LKERNAKLYLSFQDVLSVHDAFEVLKPIL
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggcctacaaggcaagtaattttctggagcgctattcggatgatcagcgcattaaactc
attcttgatcagtggtctaaagcagatcctcaaaagcttgaaattagaggtatctcagga
tcgcttggcgccattgccctggcccaaagctttcaacaaagtgaaataccgcatctgata
atcctaaatgataaggagcaagcggcctattttctcaatgatttggaaggtttgattggt
gagaaagatgtgcttttctatcccgcttcctatcgtcgaccttatgacaccgaagaaaca
gacaatgccaatgtccttttacgagcagaggtattaaaccgcttgaacagccggaagaaa
cccgccattctggttagctatgccgatgcgcttttcgaaaaggtagtgacgcgcaaaagc
cttagtgcccacacctttagcattagaaccggcgatgagcttagcattgatttcctgaat
gaaaccctcttcgaatatcaatttgaaagagtggacttcgtaattgagcctggacagttt
tccgttcgaggtggtatagtggatgtgtattccttctcccatgatcagcctttccggatt
gagtttttcgatgatgaaattgaaagcattcgaaccttcgatatcgaaagccaactgagt
attgatcaggtgaagcgtattcaattagtaccgaatgtagaaaacaaggtactgatggaa
agtcgggaaagttttctggagtacataggtcccaaaaccatcgtttggacccaaaattca
aatctgattgggagcaaacttcaagatctttatgaaaaggccctggaactttttcgggag
atcaactccgatatcagtcgcagtgaaccggcggaactctatataaacaaggaattattt
catcagcacttaaagaacttccatcaactggagtggcaggcggatgctggctttgaggcc
aatttaaaaatcgaattcaactctaaacctcaacccagcttcaataagaagtttgagctc
ctcgtagatgatctgcgcaagcatagcgaagaagattatgacaatttcctgctttgcctc
aatcaaacccaggtagaacgtttcgatgccattttcgaagacattggcaaggaggttaag
tttcaacctattgtacacactctgcatgagggctttattgaccaggaagccaaaaccctg
gtttataccgaccatcaaattttcgagcgttatcagaaattccgtttaagaaccggctac
gaaaagcgtcaggcggtaagccttaaggagctcaccgctttgcaggttggggattatatc
acccacattgaccatggtattggggagttcggtggactgcaaaaaattgaggtcaacggc
aagcatcaagaagcaattaaactgatttacagcggaggcgatgtgctctatgtgagcatt
cactctttgcataagatcagccgctataatggcaaagaaggcacggtgccctcggtgcat
aaactgggatcaggagtttggcaaaaaactaagtccaaggctaagactcgcgttaaaaag
gtggccttcgaccttataaagctttatgctaaacgtaaggctacgcatggttttcagttt
tcaccagacaattatttacagcacgaattagaggcttcctttatttatgaggatacgccc
gatcaagaatcggctactcaggccattaagcaggacatggaagcgcaaaccccaatggac
cgtcttatttgtggagatgttggcttcggaaaaacagaattggcggtacgagcagccttt
aaggcggtatgcgatagcaagcaagtggcggttttggtgcctacaactattctcgccttt
caacatcataaaacctttagcaaacgattggccgatttcccatgccgagttgagtatata
aacagatttcgcagtaggaaagagcaaaccgaaatcctgaaagatttagaagatggcaag
gttgatatcattattggcacccatcgcctggtgggtaaggacatcaagtttaaagactta
ggactgctggttattgatgaggagcaaaaatttggcgtaagcgttaaggacaagctcaag
aacctaaaggtgaatgtggatacccttaccctaacggccacacccattccgcgaaccttg
cagttttcactgatgcaggcgcgagacctgagtgtaatgactactccgccacccaaccgc
caccccattgaaacccaattgattccctttaatgaggaaatcatccgcgacagcttgcgc
tatgaattaagcagaggtggacaggttttcttcatccacaaccgagtggagaatattaaa
gaagtggcgggtatgctgcaaaggctaataccagatgcgaaaatgggtattggtcatggc
cagatggaaggcaaaaaattagagcagttaatgttgcaatttattgatggtgaattcgat
attctggtggctacctcaattattgaaaatggtttggatgtacctaatgcgaataccatc
atcattaataatgcacaaaatataggcctgagcgatctgcatcaaatgcgaggtcgcgtg
ggtcgaagcaataaaaaggccttctgtaaattaattactcctcccctttcggcgatgagc
gatgaagcccgcaaaagaatgcaggccatcgaaaaattcagtgatttgggaagcggcttc
catattgccatgcgcgatttagaaatccggggagccggggatttattgggtgctgaacaa
agtggctttatcaatgatattggctttgataccttccaaaaaatccttgctgaagcaata
gaagaactcaaggaaactgagtttaaagatctctatgccgaagaattaaagaacaaggaa
agcatcagcgataccctattggatactgacctggagatattgatccccgatcaatatgtg
aataaggtagatgagcgcttgaagctttatcaggaattggatcaattgcgcacggaagcc
gaaattgaaacctatgcccgcgatttagccgatcgctttggacctatccctcgggaggtg
gacgagcttttcgactcaattcgcttacgtcgacttggacagaaaatcggatttgagaaa
gtggttctgaagcaagaacgcttgctttgttatttcacctcggatcaggaatcaccctac
ttccaatcggatcgcttccaaaaagtactcttgtatttgaagtcggctccgcaagctcag
cttaaagaacgcaatgctaaattgtatttgagcttccaggatgtgctcagtgttcacgat
gcttttgaagtactcaaacccatcctgtag
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