Croceimicrobium hydrocarbonivorans: H4K34_05600
Help
Entry
H4K34_05600 CDS
T07152
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4K34_05600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chyd03019
]
H4K34_05600
03009 Ribosome biogenesis [BR:
chyd03009
]
H4K34_05600
Enzymes [BR:
chyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4K34_05600
Messenger RNA biogenesis [BR:
chyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4K34_05600
Ribosome biogenesis [BR:
chyd03009
]
Prokaryotic type
rRNA helicases
H4K34_05600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNR26016
UniProt:
A0A7H0VJW8
LinkDB
All DBs
Position
1207143..1208558
Genome browser
AA seq
471 aa
AA seq
DB search
MGFETPSPIQAQAIPALLDDARDLIGLAQTGTGKTAAFGLPLLERIDPEFPHTQALILAP
TRELGQQIGEQLQSFGKYLDKMNILTVYGGANIQTQMKALHKPQHILIATPGRLIDLIKR
RAVNLENLEILVLDEADEMLNMGFKEALDEILAYTPKEKMTWLFSATMPKEIRRIVDTYM
HQPFEVKIDQKQQVNQNIDHQVVHVRHHQKNLALKRFIDLDPEIRAVVFCRTKLDTQSLA
EELMKDGYGADALHGDLSQVQRDRVMKRFKNHELPVLIATDVAARGIDVNDLTHVFHFSL
PDDPSYYTHRSGRTARAGKKGISLAMIGPRDQGKLRRLEKDLGINFRQVQIPEVDDIADL
RLKTWGEQILNQPIKGNIPSGMMAELQNLWGNLSKEEFMAKVIAFEASKLNLQNEESLNV
NHGKDRGGNFRGGKKGGNRSGKPGGGGPSFKAKRKPFKHGHNRPNAKRKKK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgaaaccccatctcccatccaagcgcaagccattcctgcccttttagatgat
gcccgtgatttaattggtttagcccaaaccggtactggtaaaacagccgcctttggctta
cccctattggaacgcattgaccctgagttccctcacacccaggcattaatcttggctccc
acccgggaattaggacagcaaatcggagagcaattacaatccttcgggaagtatttggac
aaaatgaatatcctcactgtttacggtggtgcgaatattcaaactcaaatgaaggcgctg
cataagcctcagcatatcctcatcgctacccccggccgtttgatcgacttgattaagcgt
cgtgcggtaaatcttgagaacctcgaaattttggttctggatgaagcagatgaaatgctg
aatatgggctttaaggaagctttggatgaaatcctggcttatacccctaaagaaaaaatg
acctggcttttctcggctactatgccgaaagaaattcgccgcatcgttgatacttatatg
catcaacctttcgaggtgaaaatcgatcaaaagcaacaggtaaatcaaaatatcgatcat
caggtagttcacgttcgtcaccaccagaagaacctggccctgaagcgctttattgacctc
gaccccgaaatcagggcggtggttttctgtcgtaccaaattggatacccaatccttagct
gaagagctaatgaaagatggttatggggccgatgccttgcatggtgacctcagccaggta
caacgcgaccgcgttatgaagcgtttcaagaaccacgaattaccggttctgattgctacc
gacgtagccgcccgtggtattgacgtgaatgatctcacccacgttttccacttctcttta
ccagatgatccttcttactatacccaccgttcaggacgtaccgctcgcgcgggtaagaaa
ggaatctctttggcgatgattggccctcgtgatcaaggaaaactgcgtcgtttggaaaaa
gatttaggtatcaatttccgtcaggtacaaattcctgaagtggacgatatcgctgacctc
cgcttaaaaacttggggcgagcaaatcctgaatcaaccgatcaaaggaaatattccttct
ggcatgatggccgagctacaaaacctttggggaaacctttccaaagaggagtttatggcc
aaggtaattgccttcgaagcttctaaattaaacctccaaaatgaggaaagcctgaatgta
aaccatggcaaagaccgtggtggtaatttcagaggcggaaaaaaaggaggcaaccgaagc
ggcaaacccggtggcggaggtccttccttcaaagccaagcgcaagcctttcaagcatgga
cataatcgtccgaatgcaaagcggaagaagaagtag
DBGET
integrated database retrieval system
