Croceimicrobium hydrocarbonivorans: H4K34_10350
Help
Entry
H4K34_10350 CDS
T07152
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4K34_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chyd03019
]
H4K34_10350
Enzymes [BR:
chyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4K34_10350
Messenger RNA biogenesis [BR:
chyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4K34_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
Astro_VPg
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QNR22780
UniProt:
A0A7H0VAN2
LinkDB
All DBs
Position
complement(2306611..2307822)
Genome browser
AA seq
403 aa
AA seq
DB search
MNRKTTAPSRRPGKPKSQHTGKPKGRRRPQGKPKNPSSIKPQDLLNQAEPREERHFEASF
EYQDSALHPKLKELLAAKGYEKPTEIQEKSLEPLLAGRDLLGIAKTGSGKTAAFLLPLLQ
RQIQGKHQALILAPTRELAVQIEEEYRSLSKGLKLYSAVFIGGTNMNTDLRKAARNQDLI
VATPGRLLDLHQRNALHFRSIKMLVIDEFDRLLDMGFERDLNHIIDLLPIERQNLLFSAT
LDRAQERRISEILVDPVRLQISSGDLTNNHVQQELIHLKDGQVKIEVLKEMLQRPGFDKV
IIFAETKRWVSKINRKLRQADIRSDEIHGDKSQNYRQKALNSFKAGKLQVLIATDVAARG
IDVDDVSHVINYQIPRSMDSYIHRVGRTGRAGKTGIAYTFIES
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaaaaacaacggctccatcccgtagaccgggaaagcctaaatctcaacatact
ggcaaacctaaaggaagacgtcgaccgcaaggcaagcctaagaatcctagcagcattaag
ccgcaggatttattaaaccaggctgagccccgtgaagaacgtcactttgaagccagcttc
gaatatcaagacagcgccctccatcctaaattaaaggaattactggccgctaaaggctat
gaaaagcccactgaaattcaagaaaaaagtttggaacccctattagcgggtcgtgatctt
ttagggattgccaaaaccggtagtggtaaaacggcagcctttttattacccttattacaa
agacagattcaaggtaaacaccaagccttaatcttagcccctacccgtgagcttgcagta
caaattgaagaagaataccgcagcttaagtaaaggacttaaattatatagtgctgttttt
attggcggcaccaatatgaataccgacctgcgtaaagcggctcgtaatcaagatttgatc
gttgccactccgggtcgacttttagatttacaccagcgtaatgccttgcatttccgctcc
attaagatgttggttattgatgagttcgaccgccttttagacatgggctttgagcgcgac
ctcaatcacattattgacctcttgccgattgaacgccagaacttgttgttctctgccacc
ttggatcgagcccaagaacgtcgtataagtgaaattctcgtggatccggtacgcttgcaa
attagcagcggtgacctaacgaacaaccatgttcagcaggagttaatccatttaaaagac
ggacaggttaaaatagaggtcttaaaggagatgctgcaaagacctggcttcgataaggtg
atcatctttgccgagaccaagcgttgggtaagcaagatcaatcgcaaactccgtcaagcg
gatattcgttccgatgaaattcatggtgataaaagccaaaattaccgtcaaaaggcctta
aactcctttaaagccggcaagctgcaggttttaattgctaccgatgtagcggcccgtggg
attgatgtggatgatgtatcacatgtgatcaattatcaaatccctcgcagcatggatagc
tatatccaccgcgtgggtcgtaccggccgcgcaggcaaaaccggaatcgcttacactttt
atagaatcataa
DBGET
integrated database retrieval system
