Croceimicrobium hydrocarbonivorans: H4K34_13625
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Entry
H4K34_13625 CDS
T07152
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03030
DNA replication
chyd03430
Mismatch repair
chyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4K34_13625 (dnaE)
03430 Mismatch repair
H4K34_13625 (dnaE)
03440 Homologous recombination
H4K34_13625 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chyd03032
]
H4K34_13625 (dnaE)
03400 DNA repair and recombination proteins [BR:
chyd03400
]
H4K34_13625 (dnaE)
Enzymes [BR:
chyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H4K34_13625 (dnaE)
DNA replication proteins [BR:
chyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H4K34_13625 (dnaE)
DNA repair and recombination proteins [BR:
chyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H4K34_13625 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DUF1660
Motif
Other DBs
NCBI-ProteinID:
QNR23410
UniProt:
A0A7H0VCG2
LinkDB
All DBs
Position
2998062..3002369
Genome browser
AA seq
1435 aa
AA seq
DB search
MFLIFDTETTGLPIRDDAPLSDFENWPRAVQIAWQLHDEQGNLVEAQDFVIQPDGFDIPF
NAAKVHGITTAVAKEYGVPLEEAMHHFSEAVKKAKFLVGHNLQFDNNILGCEYLRLEQEN
ILEGLPVLDTGEETREYCQLAGGRGGGYKMPRLEELHEKLFGHKFAEAHNAAADVEATTR
CFFEAVRLGIFTDKHLEWTEAERDAFAAANPAMIKPIGLKVQSFKELARELEARQAAGGR
SGESQDIVLDADLKFTHLHVHTQYSILQATCDVNALINKAKEEGMPAVAMTDIANLYGAF
KFVSAARAAGLKPIVGVEFYLCRDHKDKSVKDNGFQIVAIAKNKAGYHNLAKLSSHGFTD
GYYYVPRIDRDLLLQYKENLIVTTGSLNGEIPRLILNVGEKQAEEAFLWYLEHFGEDFYV
ELVDHGLEEERVVNQTLIRFAQKHGVKYFASNDVYYLGEGDANAHDILLCVKEGEYQSTP
IGRGRGYRYGFPNDQYYFKTDAEMKQLFADRPEAIATTQEIVDKIEAYDLARDVLLPAFD
IPDEFRDPEDEKDGGKRGENNYLRHLTYVGAKSRYGEITDDIKQRLDFELDTIANTGYPG
YFLIVQDFTSQAREMGVSVGPGRGSAAGSAVAYCIGITNVDPIKYDLLFERFLNPDRVSL
PDIDIDFDDEGRGKIIDWVVNKYGQNQVAQIITYGTMAGKSAIRDAGRVLQLPLSETDRV
AKLVPDVKLNKLFAWSDKEMSENLNGDLLPLGKQLKELSNQNSLEAQVVNQARILEGSVR
NTGIHACGVIITPDDITKFIPVSVAKDSDLYVTQFDNSVVESAGMLKMDFLGLKTLSIIK
DAIAIVKARHGVEIDTDEIPLDDLKTFELYQRGETNGTFQFESPGMQKHLKALKPDKFAD
LIAMNALYRPGPLEYIPNFIARKHGTEEITYDLPEMEEYLAETYGITVYQEQVMLLSQSL
AGFTKGEADVLRKAMGKKKRDVLDKMKPQFIDQGKERGHDEEKLNKIWKDWEAFAAYAFN
KSHSTCYSVVAFHTGYLKANYPAEYMASVLTHNMNDIKKVTFFMEECKRMEIPVLGPDVN
ESQFKFTVNDEGAIRFGLGGMKGVGEGAVMAIVNERFENGSFNTFFDLLKRIDLRAVNKK
TLESLALGGAFDNFPKVHRATFFSEGQDGKTFLERALRYAQMHKAQEESAQVSLFGESQE
VDMPEPEVPVVQPWPRMFLLGKEKEVNGLYLSSHPLDDFKYEMDHVVTNRLSEFQMMERM
NDFCVAGIISDALHLTARSGKPFGRFTIEDYSGKHEFALFGDDYLKFKSYIETNLLVLIR
GKISRYTPRWEGATERIEAKISQVSLIQDVLERHARGVELQLAVQSVNPENIEAINAIIN
EYQGEKSLNLLIFDAENPKINLRMPRRSKAGIALHKQSLDALKALPFARMQLKAD
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
gtgtttttaatttttgataccgaaacaaccggtttacccatccgcgatgatgcgccctta
agtgattttgagaactggccccgtgcggttcagattgcttggcagttgcatgatgagcag
ggaaatctggtggaggcccaggattttgtgattcagccggatggctttgatattcccttt
aatgctgccaaggttcacggtattaccaccgcggttgccaaagaatacggggtaccccta
gaagaagccatgcaccactttagtgaggcggtaaaaaaggccaagttcctggtagggcat
aaccttcaattcgataacaatattctgggttgcgaatacctgcgcttggagcaagagaat
atcttagaaggccttcctgtactggatacaggtgaggaaacccgtgaatattgccaattg
gctggtggtcgaggcgggggctataaaatgcctcgtttggaggagctgcatgaaaagctc
ttcggacacaaattcgctgaggcacataatgccgcagctgatgtggaggctaccacacgc
tgtttcttcgaagcagtgcgcctcgggatttttaccgataaacatttagagtggactgaa
gcggagcgtgatgcttttgcagcggcaaatcccgccatgataaagccgattggcctcaag
gttcaaagctttaaagaactggcccgagaactggaagctcggcaagccgctggtggcaga
tcaggcgaaagccaggacatcgttctcgatgccgatttgaaatttacccacctgcatgtc
catacccaatattctattttgcaggctacctgcgatgtgaatgccttaataaataaggcc
aaggaggagggaatgcctgcggtggccatgaccgatattgccaatttatacggcgccttt
aaattcgtttcggccgccagagcagcaggcttaaagcccattgtgggtgtagaattttac
ctctgccgcgatcataaggataagtcggttaaggataatggttttcaaatagttgccata
gccaagaataaggcgggttaccataatttggccaagctttcatctcatggttttacggat
ggctattactatgtgccccgtattgatcgtgatttgcttttacaatacaaggaaaacctc
attgtaacaacaggcagcctcaatggcgaaattccacgattgattttgaacgtgggtgag
aagcaagccgaggaagccttcttgtggtacctcgagcattttggtgaggacttttatgta
gagttggtagaccatggcttggaagaagagcgagtggtaaaccaaactttgattcgcttt
gcccaaaagcatggcgtaaaatattttgcatcgaatgatgtgtactatttgggtgagggt
gatgccaatgcccacgatattttgctctgcgtaaaagagggcgaataccaaagtacaccc
attggaaggggacgtggatatcgctacggcttccccaatgatcaatactattttaagacc
gacgcggagatgaaacagctcttcgcagatcgtccggaggccattgccaccactcaagaa
atagtagataaaattgaagcttacgacctggctcgggatgtactcttacccgcctttgat
atcccggatgaatttcgcgatccggaagatgaaaaggatggaggtaagcgcggggagaat
aattacctgcggcatcttacttatgtaggagccaaatctcgctatggtgagattacggat
gatattaagcagcgtctcgactttgagctggataccatcgccaataccggatacccgggc
tacttcctcattgtgcaggattttacttcgcaggcccgtgaaatgggagtgagtgtaggt
cctggacggggctcggccgctggatcggcggtggcctattgtattggtattaccaatgtg
gatcccattaagtacgatttactttttgagagattcctgaatccggatcgggtgtcgcta
ccggatattgatatcgactttgacgatgaaggtcggggtaagattatcgattgggtagta
aataaatacggtcaaaaccaggtagcgcagattattacctacggtaccatggctggtaag
tcggcgattcgtgatgccggtcgggtattgcaattaccgctctccgaaaccgatcgtgtg
gccaaattggtacccgatgtaaaactcaataagctctttgcctggagtgataaggagatg
agcgaaaacctcaatggcgatcttttgcctttggggaaacaattgaaggaactttccaat
caaaatagcctggaagctcaggtggtaaaccaggcccgtatattagagggttcggtacga
aataccggaattcatgcctgtggggtgattattacccctgatgatattaccaagtttatt
ccggtttcggtagccaaagactccgatctctatgtaactcagtttgataactcggtggta
gaaagcgccgggatgctgaagatggacttcctgggcttgaaaaccctgagtatcatcaaa
gatgccattgccattgtgaaagctcggcatggagtggagattgataccgacgaaattcca
ctggatgatctcaagacctttgagctctaccagcggggtgaaaccaatggtaccttccag
tttgaaagtccgggtatgcaaaagcacctgaaggctttaaagccggataagtttgcagac
cttattgcgatgaacgccctttaccgtccggggcctctggaatacattcccaactttatt
gcccgtaaacacggcaccgaggaaatcacttacgacctcccggaaatggaggagtacctg
gcggaaacttatgggattaccgtttatcaggagcaagtaatgcttctttcccaaagtctg
gcgggctttaccaagggtgaggccgacgtactgcggaaggccatgggtaagaagaagcga
gacgtgctggataagatgaagccccagtttattgatcaggggaaagaacgtgggcacgac
gaagaaaaactaaataagatttggaaggactgggaagcttttgcggcctatgcctttaac
aaatcgcactctacttgttattcggtagtagccttccatacgggttatcttaaagcgaat
tatccggccgagtatatggcctcggtgcttacccataacatgaacgacataaagaaggtg
accttttttatggaggagtgtaagcgtatggaaattccggttttgggtccggatgtaaat
gaatcccaatttaagtttaccgtaaacgatgaaggcgctattcgcttcggtttaggagga
atgaagggcgttggtgaaggtgcggtaatggcgattgttaatgagcgctttgaaaacggt
tcctttaataccttcttcgatttattaaagcgtattgacctaagagcagtaaacaagaaa
accttggagagcctggccttaggtggggcttttgataatttccccaaggtacaccgggct
accttctttagcgaaggacaggatggtaagacctttttggaacgtgccctccgttatgcc
caaatgcataaggctcaggaagaatctgcgcaggtatcgcttttcggcgaaagccaggaa
gtagacatgcccgaacccgaagttccggtggtgcagccctggccacggatgttcttattg
ggtaaggagaaagaggtgaatggtctttacttaagctcgcatcccctggatgattttaag
tacgagatggatcatgtggtgaccaatcgtttgtcggaattccaaatgatggagcggatg
aatgatttttgtgtggccggaattatctcggatgccttgcacctcacagcgcgtagtggc
aaacctttcggccgatttaccattgaagattatagcggtaagcatgagtttgcgctcttt
ggagatgattacctgaaattcaagtcttatatcgaaaccaatttgctggttttaattcgt
ggtaaaatctctcgctatacgccgcgttgggaaggcgctaccgaaaggatcgaagcgaaa
attagccaggtaagcttgatccaggatgtattggaacgccatgctcgtggagtagaattg
cagctggcagtgcaatccgtaaaccccgaaaatatagaggcaatcaatgccattataaat
gaatatcaaggggagaagtcgctgaatcttttgatttttgatgcagagaatccgaagata
aatctgcgtatgccgcgtcgtagcaaggctggcatcgcattgcataaacagagtttagat
gctctgaaagccttaccctttgcgcgaatgcaattaaaggccgattaa
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integrated database retrieval system
