Croceimicrobium hydrocarbonivorans: H4K34_14100
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Entry
H4K34_14100 CDS
T07152
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4K34_14100 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chyd03019
]
H4K34_14100 (rny)
Messenger RNA biogenesis [BR:
chyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H4K34_14100 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
AvrPto
KH-I_KHDC4-BBP
DUF6481
DUF4954
Ribosomal_S18
Membralin
Motif
Other DBs
NCBI-ProteinID:
QNR23501
UniProt:
A0A7H0VCQ3
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Position
complement(3123399..3124937)
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AA seq
512 aa
AA seq
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METTTLILILAALIVGFGTAFVFNMLILKKKNQNILAEAQKEAEGIKKEKILQAKEKFLE
LKAEHEKVINKREQKLNDRFNNLKEKEQRVREHAENNKKDYKENQRLREELSKKVEVNDA
RSKELEKMHRKQVEQLEVISGLSPEEAKNQLLEALKEEAKTDAAAFIQTTMEEAQLSATR
EARKVVIQTIQRVATEQAVENSVSVFNIENDDVKGRIIGREGRNIRALEAATGVEIIVDD
TPEAIILSCFDPVRREIARLSLHKLVSDGRIHPARIEEVCNKTRKQIEEEIFEVGKRTTI
DLGIHGLHPELVRMVGRMKYRSSYGQNLLQHSREVANLCGIMAAELGLNPKIAKRAGLLH
DIGKVPSEESELPHAILGMKMAEKYGEKPEVCNAIGAHHDEIEMTGLISPIVQVCDGISG
ARPGARRQIAESYMQRLKDLEQLAISQNGVTQAYAVQAGRELRVIVDCEKVSDADAAKIS
FDISQKIQNEMTYPGQVKITVIRETRAVNVAR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaacaactttaattcttattctggcagctttaatcgtaggctttggaaccgcc
ttcgtttttaatatgctgatcttaaaaaagaaaaatcaaaatatcctggccgaagctcaa
aaagaagctgaaggcattaaaaaggagaaaatcttacaggccaaggagaaattcctggag
ctgaaagccgaacatgaaaaggtaattaacaagcgtgagcaaaagctcaacgaccgcttt
aataacctgaaggaaaaagaacaaagggtgcgcgagcatgccgaaaacaacaagaaagat
tataaggaaaaccaacgcctgcgcgaggaactgagcaaaaaggtagaggtgaatgatgct
cgcagtaaggagctcgaaaaaatgcaccgcaagcaggtggagcaattggaagtaatctcc
ggcttaagtccagaggaagctaaaaaccaattattagaagctcttaaagaagaggctaaa
accgatgccgccgccttcatccaaacaaccatggaagaagcgcaattaagtgccactcgt
gaagcccgtaaagtggtgatccaaaccatccagagagtagctactgagcaggctgtggaa
aactccgtttcggtatttaatattgaaaacgacgatgttaaaggccgtatcatcggtcgt
gaaggtcgtaacattcgcgccctggaagcagcaaccggtgttgaaattattgtggatgat
accccggaagcaattatcctaagctgctttgatccagtacgtcgtgagattgcccgcctt
tctttacacaaattggtttcagacggacgtattcacccagcccgtattgaagaagtttgt
aataagactcgtaaacaaattgaagaggaaatcttcgaagtgggtaagcgtactacgatc
gatttaggtattcacggcttgcatcctgagttggttcgcatggttggtcgtatgaaatac
cgttcttcttacggacaaaacttgctgcaacactcacgtgaagtggccaacctctgtggt
attatggcggctgaattaggtttgaatcctaagatcgccaagcgtgccggcttattgcat
gatattggtaaagtaccttcggaagaaagtgaattgccacacgctattttgggtatgaag
atggccgagaaatacggcgaaaaacctgaagtatgtaatgcgattggtgctcaccacgat
gaaattgagatgactggccttatctctcctatcgttcaggtttgcgatggtatttctgga
gcccgtcccggtgcacgtcgtcagatcgccgaaagctatatgcagcgtttgaaagacctg
gagcaattagcaatttctcaaaatggggttactcaagcttatgcggtgcaagccggtcgt
gagcttcgggtaattgtagattgcgagaaagtgagtgatgccgatgctgcgaaaatcagc
ttcgatatcagccagaaaattcaaaatgaaatgacctatcccggacaggtaaagattacc
gtaatccgagaaactcgtgccgtaaacgtagcgcgctaa
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