Croceimicrobium hydrocarbonivorans: H4K34_17355
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Entry
H4K34_17355 CDS
T07152
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H4K34_17355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chyd03019
]
H4K34_17355
Enzymes [BR:
chyd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H4K34_17355
Messenger RNA biogenesis [BR:
chyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H4K34_17355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
AAA_22
AAA_19
OCD_Mu_crystall
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QNR24115
UniProt:
A0A7H0VEG7
LinkDB
All DBs
Position
complement(3873916..3875292)
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AA seq
458 aa
AA seq
DB search
MKFSDFNLNPDLLESLSYMNFEEATPIQEQAIPLILEGKDIIGCAQTGTGKTAAFVLPVL
HKLVDQRKKGVIDSLILCPTRELAIQIEQQIQGLAYFSDLTSYAVYGGGTGPEWEAERRA
LSEGTDIIIATPGRLLAHIRNEYVKLDQLQYLILDEADRMLDIGFYDDIKRIIQECPPQR
QSLMFSATMAPKIRKLAKEILQDPAEVNLAVSKPAEGVTQMVYMAHEEQKQGLARHIIAQ
YPDFKSIIIFCSTKKKIQKLVASLQRKGLNVEGISSDYEQSEREKILLQFKARKTRILVA
TDVLSRGIDIKDIDLVINYDVPNDAEDYVHRVGRTARAAAKGMAITFISGEEIYKFKRIE
TFVERDYEKLSPPEDLGKAPEWKEPERRSRNSRGRSQGNRPPQKGGNKSRKPQHKKAGNG
PKAEDGSRPDNASKPKRRFNKRRPKPNSDSNSKPKTDS
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcagattttaatttaaatcctgaccttctggaatcgctatcctatatgaac
tttgaggaagcgacccctattcaggagcaagccattccattaattttggagggtaaggat
ataatcggatgcgcacaaaccggtaccggaaaaaccgcggcctttgttttgcctgtcctg
cataagctggtagatcagcgtaaaaaaggagtaatagacagcttgattctttgccccact
cgcgaattagcgattcaaattgaacaacaaatccaaggtctggcctacttttccgacctt
acctcctatgctgtttatggcggcggtacgggcccagaatgggaagctgaacgtcgcgcc
ctaagcgaaggaaccgatattattattgctactcccggtcggcttttagcccatatccgc
aatgaatatgtgaagctggatcaattgcaatacctcattttagatgaggccgatagaatg
ctagacatcggcttttatgatgatattaagcggattattcaggaatgcccgccccaacgc
caatctctgatgttctccgccaccatggcccctaagattcgcaaattggctaaggaaatt
ctgcaggatccggcggaagtgaatttagccgtttccaaaccagccgaaggggttacccaa
atggtctatatggcccatgaagagcaaaagcaaggcttggcgcgccatattattgcgcag
tatcccgactttaaaagcataatcatcttctgctctactaagaagaaaattcaaaagctg
gttgcttctttacagcgtaaagggcttaatgtagaaggcatttccagtgattatgagcaa
agcgaaagggaaaagattctcctgcaattcaaggcacgtaaaacccgcattttagtagcc
accgatgtattgagccgtggtattgatatcaaggatatcgacctggttattaattacgat
gtacccaatgatgccgaagattatgtgcaccgtgtagggcgaacggcccgcgctgctgca
aagggcatggcgattacctttattagtggagaggagatttataaattcaagcgcattgaa
actttcgtagaacgggactatgaaaagcttagtccgccagaagacttaggcaaggccccg
gaatggaaggaacccgagcgccgttctcgtaattctcgtggtcgtagccaagggaatcga
cctccacaaaaaggtggcaataaatcgcgtaagccccagcataaaaaagctggaaacggc
cccaaagctgaggatggatcccgtccggacaatgcttctaaacccaaacgacgctttaat
aaacgccgaccgaaacccaattcggactccaattccaaacctaaaaccgattcttaa
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