Croceimicrobium hydrocarbonivorans: H4K34_17455
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Entry
H4K34_17455 CDS
T07152
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
chyd
Croceimicrobium hydrocarbonivorans
Pathway
chyd03030
DNA replication
chyd03430
Mismatch repair
chyd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chyd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4K34_17455
03430 Mismatch repair
H4K34_17455
03440 Homologous recombination
H4K34_17455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chyd03032
]
H4K34_17455
03400 DNA repair and recombination proteins [BR:
chyd03400
]
H4K34_17455
Enzymes [BR:
chyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H4K34_17455
DNA replication proteins [BR:
chyd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H4K34_17455
DNA repair and recombination proteins [BR:
chyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H4K34_17455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
RNase_H_2
DNA_pol_A_exo1
Rv2179c-like
DUF7508
divDNAB
Motif
Other DBs
NCBI-ProteinID:
QNR24134
UniProt:
A0A7H0VEI6
LinkDB
All DBs
Position
3889374..3890723
Genome browser
AA seq
449 aa
AA seq
DB search
MFAVVDIETTGSYARGNGITEIAIYITDGLEIKDTYSTLLNPGQSIPFAIQQLTGIDDSM
VADAPTFAEKAEEIREFLADHVFVAHNVSFDLGFVQAAFKEVGVNYNPRRLCTVRYSRRI
IPGLRSYSLSSLCKHFNYNNQSAHRAWADTEVTTKILHQLLAADTAGIWQNMIKLNQGEL
NLPANLPADEFHNLPMAAGVYYFYNEKGEILYIGKASRLKSRVASHFTADKSSARSAAFK
RDIAHIHYRLCGNILVAGLLEDHEIRRYWPPHNRAQKSPKLRFGVFAYRNQNADWCLGIN
RIGGQQAFIAKFHSLEKARTWLAEIVEERNLDPNRCGFPKGSGDTADDHNAKVEALMAEM
QSVQSAMLWIGAGRTEEEQSFVYMDSQGFQGIGFVPREQSIERAEHIEPYLERLNKSAST
EGILKEGWKKLTLKQIELPEEIQSNGLLF
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgcagtagtcgacattgaaaccaccggatcttatgcccgcggaaatggcatcacg
gagattgctatatacatcactgatggtctggaaattaaggacacttatagcacactcttg
aatccggggcagtcgattccttttgccatccaacaacttaccggtattgatgattcgatg
gtagcggatgccccaacttttgctgaaaaggcggaggaaattcgcgaattcctggccgat
catgtctttgtggcccataatgtgagtttcgatttgggctttgtgcaagccgcatttaag
gaagtgggagtaaattacaatccgcgacgattgtgcaccgtgcgctattcgcgtcgcatt
attccaggtttacgctcttatagtttatcctccctttgcaagcattttaattacaacaat
caaagtgcacaccgggcttgggccgatacggaggtaactaccaagattctgcatcaatta
ttggcggccgataccgctgggatttggcagaatatgataaagctcaatcaaggggagttg
aatttgcccgccaatcttccggctgatgaatttcacaatttacccatggcggccggggtt
tattatttctataatgaaaaaggggagatcctttatatcggcaaggccagtcgcctgaaa
tctcgcgtagcctctcattttacagcggataagagtagtgcccgtagtgctgcttttaag
cgtgatattgcgcatatacattatcgcttatgtgggaacattctggtagccggacttctg
gaagaccatgaaattcgtcgctattggcctcctcataatcgagcccaaaagagtcccaaa
ctacgatttggagttttcgcctatcgcaatcaaaatgcggattggtgtttgggcatcaat
cgaatcggtggacagcaagcctttattgccaaattccatagtttggaaaaggctcgtact
tggctagcagagattgtagaagagcgcaatttggacccaaatcgttgtggattccccaaa
ggaagtggcgatacggccgatgatcacaatgccaaggtggaggctttaatggcagagatg
cagtcggttcaaagcgctatgctatggattggtgccggtagaacggaggaggagcagagc
tttgtgtatatggatagtcagggtttccaaggcattggctttgtacctcgagagcaaagt
attgagcgagccgagcatattgagccttatctggaacgcttgaataaaagtgccagtacg
gaaggaatcctaaaagaaggttggaaaaagcttacacttaagcagatagaacttcctgaa
gaaattcaatcgaacggtttacttttttaa
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