Campylobacter hyointestinalis: CHH_1322
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Entry
CHH_1322 CDS
T04651
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chyo
Campylobacter hyointestinalis
Pathway
chyo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chyo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHH_1322 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chyo03021
]
CHH_1322 (rpoC)
03400 DNA repair and recombination proteins [BR:
chyo03400
]
CHH_1322 (rpoC)
Enzymes [BR:
chyo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHH_1322 (rpoC)
Transcription machinery [BR:
chyo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHH_1322 (rpoC)
DNA repair and recombination proteins [BR:
chyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHH_1322 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF6675
Motif
Other DBs
NCBI-ProteinID:
ANE32943
LinkDB
All DBs
Position
complement(1274781..1279301)
Genome browser
AA seq
1506 aa
AA seq
DB search
MSELKPIEIKEDAKPRDFEAFRLRLASPERIKAWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPIRDYECLCGKYKKMRYKGIKCEKCGVEVTSSKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGIKMKDLERVLYYEAYIVEQPGDAYYDNENSKKVELYDVLNEEQYVLLEQK
FGESGFKARMGGEVIRDLLANLDLVAILEQLKIEVESTNSEAKKKTIVKRLKVAENFLNS
GNRPEWMMITNLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNARLKRLMELDAPEI
IIRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPKLRMDQCGLPKKMALELFKPHLLARLEEKGYATTVKQAKKMIEDKTNEVWE
CLEEVVDGHPIMLNRAPTLHKMSIQAFHPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKVLMLSSMNILLPASGKAVTVPSQDMVLGIYYLSLEKEEAKGANKIFASV
DEVMISVEAHYLDLHAKIKTIVGGRAVFTTAGRLIIKSILPDLKENSVPESMWNKIMKKK
DIANLVDYVYKNGGLEVTASFLDRLKNLGFRYATKAGVSISVADIIIPESKYSYVNEAKK
KVREIQNQYGSGLLTDSERYNKIVDIWTDTNNKVAAEMMKLIKTDKNGFNSIYMMADSGA
RGSAAQIRQLAGMRGLMAKPDGSIIETPITSNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVAQNVKVTMDDCGTHEGVEITEITESGELIESLEERVLGRVLSDDVID
PITNEVLFTEGTLIDEAKARTITDAGIKSVSIRTPITCKAGKGVCAKCYGINLGEGKLVK
PGEAVGIISAQSIGEPGTQLTLRTFHIGGTASTEQQDRQVIAQKEGFIRYYNLNTYENKG
KMIVTNRRNAAILLVEPKIKAPFDASINIEVAHEDVSIILTGKDNEIKYVLRKHDLAKPN
ELAGVSGKVEGKLYIPYVKGDMVKENESVVEVIKEGWNIPNRIPFASEVKVADGDPVTQT
ITAGAKGILKFYILKGDYLERIKNIKKGYTVTEKGLFVVIADDDDREAERHYIPRGSIIE
FNDSDSVVAKDVIVKPHSDEKLVIAEWDPYSTPVIAEEGGIVAYEDIEPGYSVAEQYDEA
TGQSRLVINEYLPSGVKPTIVISTKNGKLIRYQLEPKTAIFVTDGQSVDQADILAKTPKA
VAKSKDITGGLPRVSELFEARRPKNTAIIAEIDGVVRFDKPLRSKERLIIDAKDGTSTEY
LIDKSRQIQVRDGEFVHAGEKLTDGLVSSHDILRILGEKALHYYLISEIQQVYRSQGVAI
SDKHIEIIVSQMLRQVKIVDSGHTNFIIGDMVSRRKFREENKRIMKMGGEPAIAEPVLLG
VTRAAIGSDSVISAASFQETTKVLTEASIAAKFDYLEDLKENVILGRMIPVGTGLYQDRK
VKIRTN
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagttaaaacctattgagataaaagaagacgcaaaaccaagagattttgaagct
tttagattaagacttgcaagtccagagcgtataaaagcatggagtcacggtgaagttaaa
aaacctgaaactataaattatcgtactttaaaacctgagcgtgatggtctattttgtgcc
aagatttttggtcctataagagattatgaatgcttatgtgggaagtataaaaagatgcgc
tataaaggcatcaaatgcgagaagtgcggcgtggaagttactagttcaaaagttcgtcgc
tcacgtatgggtcacatcgagctcgtaactcctgtagctcatatatggtatgtaaattcg
cttccgagccgtatcggtactcttcttggtatcaagatgaaagatttggagcgtgtatta
tactatgaagcttatatagtagagcaaccaggcgatgcttattatgataatgaaaacagt
aaaaaagtcgaactttatgatgttttaaatgaagaacaatatgtccttttagagcaaaaa
ttcggtgaaagcggttttaaagctcgaatgggcggagaagtaatacgtgatctacttgca
aatttagatctagtagctatactagaacaattaaaaatagaagtagaaagcacaaatagt
gaagctaagaaaaaaaccatagtaaaacgtttaaaagtagctgaaaactttttaaattca
ggcaatcgccctgaatggatgatgataacaaatttacctgttttaccaccagatttaaga
cctcttgttagccttgatggcggtaaatttgctgtttctgatgtaaatgatctatatcgc
cgtgttataaatagaaatgcacgtttaaaaagacttatggaacttgacgcgccagagatt
attatccgtaatgaaaaaagaatgcttcaagaatcagtagatgctttgtttgacaacggc
agacgtgcaaatgcggtaaaaggtgcaaataaaagaccgcttaaatcactttctgagatc
ataaaaggaaagcaaggtcgtttccgtcaaaatctacttggtaagcgtgtcgatttttca
ggtcgttctgttatcgtagtaggaccaaagcttagaatggatcaatgtggtcttcctaaa
aaaatggctcttgagttatttaaaccgcatcttttagctcgtcttgaagaaaaaggctat
gcgactacagtcaaacaagctaaaaaaatgatagaagacaagacaaatgaggtttgggaa
tgtcttgaagaggtagttgatggccatccgatcatgctaaaccgtgcgccgactctacat
aaaatgtctattcaagcatttcacccagttcttatagaaggtaaagctatccagcttcat
cctcttgtttgttcagcgttcaacgcggacttcgacggcgatcaaatggctgttcatgtt
ccactttctcaagaagcgattgctgaatgcaaagtccttatgctaagctctatgaatatt
ttgcttcctgcaagcggtaaagctgtaactgttcctagccaagatatggttttgggaatt
tattatctaagtcttgaaaaagaagaagctaaaggtgcaaataaaatttttgcaagcgtt
gatgaggtaatgatatctgttgaggctcactatctggatctgcatgcaaagatcaaaact
attgttggaggaagagctgtatttacgactgctggacgtcttatcataaaatcaatttta
ccagatctcaaagaaaactctgttccagaatcaatgtggaataagataatgaagaaaaaa
gatatagcaaatttggttgattacgtctataaaaacggcggcttagaagtaactgctagc
ttccttgatagacttaaaaatttaggttttagatatgcgactaaagcaggtgttagtatt
tcggtcgctgatattatcattcctgaaagtaaatatagctatgtaaatgaagccaagaaa
aaagttagagaaattcaaaaccaatacggctcaggtttgctaactgattcagagagatat
aataagatcgttgatatctggacagatacgaataacaaagttgcggctgaaatgatgaaa
ctcatcaaaacagacaaaaatggatttaactctatttatatgatggcagactctggagca
agaggtagcgcagctcaaattcgtcagcttgctggtatgcgtggacttatggcaaaacct
gatggttcgatcattgagactcctattacatcgaatttccgtgagggactaaacgtgctt
gagtatttcatctcaacccatggtgctagaaaaggtcttgctgatactgcgcttaaaact
gcgaatgctggatatttgacaagaaaactaatcgacgtagcgcaaaacgttaaagttact
atggatgattgcggaacgcatgaaggcgttgagataacagagataacagaaagcggagag
cttatagaaagtcttgaagagagagttttaggacgtgttttaagtgatgatgttatagat
cctataacaaatgaagttttattcacagaaggaactttaatagatgaagcaaaagctaga
actatcactgatgctggtatcaaatcagtaagtataagaactcctataacttgtaaagca
ggtaaaggtgtatgtgcaaaatgttacggtattaaccttggtgagggcaaactagtaaaa
ccaggagaggcagttggtatcatctctgctcaatcaatcggtgaacctggtactcagctt
actctaagaacattccacatcggcggtactgcttctacagagcaacaagatcgtcaagtt
atagcacaaaaagaaggttttataagatattacaacctaaatacttatgaaaataaaggc
aagatgatagttacaaatcgtcgtaatgccgctattttgcttgttgaaccaaaaatcaaa
gcaccgtttgatgcaagtataaatatcgaagtagcccacgaggacgtaagtattatatta
accggaaaagataacgagataaaatacgttcttagaaaacacgacttagctaagccaaat
gaactagctggagttagtggtaaagttgaaggaaagctatatattccttatgttaaaggc
gatatggtaaaagagaacgaaagcgtagtagaagtcattaaagagggatggaatatacca
aaccgtattccgtttgctagcgaagtaaaagttgccgatggcgaccctgttacgcaaacc
ataacagccggagctaaaggtatacttaaattttatattctcaaaggcgactatctagag
agaatcaaaaatattaaaaaaggctataccgtaactgaaaaaggtctatttgtcgttatc
gcagatgatgacgacagagaagcggagcgtcattatatccctagaggtagcattatcgaa
tttaacgatagtgatagtgttgtcgcaaaagatgtaattgtaaaaccacatagcgacgaa
aagctagtgatagcagagtgggatccatattcaactccggttattgccgaagaaggcggt
atagttgcttatgaagatatagagcctggatatagcgtcgcagagcaatatgatgaagca
acaggtcaaagtcgtctagtcataaacgagtaccttccaagcggtgtcaaaccaaccata
gttatatcgactaaaaatggaaaattgatccgttatcaactagagccaaaaacagctatt
ttcgtaactgatggtcaaagcgttgatcaagccgatattttagcaaaaacaccaaaagcg
gttgcaaaatcaaaagatatcaccggaggtcttcctagggtatcagagctatttgaagca
aggcgtccaaaaaatactgctatcatagccgagatcgacggagtagtaaggtttgacaaa
ccgcttcgttcaaaagaacgccttatcatagatgcaaaagacggcacaagcacagaatat
ttgatagataaatcacgtcaaattcaagtaagagatggagagtttgtgcatgcaggtgag
aaattaaccgatggtttggtaagtagccacgatatcttaaggattttgggtgaaaaagct
cttcactattaccttataagtgagatacaacaagtttatcgttcacaaggtgttgctatt
agcgataaacacattgagatcattgtttctcaaatgttaagacaagtaaagatcgtagat
agtggacatacaaacttcattatcggagatatggtaagcagacgtaaatttagagaagaa
aataaacgtatcatgaaaatgggcggagagccagctattgctgagcctgtacttcttggt
gttacaagagccgctataggaagtgatagcgttatctcggcagcttctttccaagagact
acaaaagttttaacagaagcaagcatcgctgctaaatttgactatcttgaagatctaaaa
gaaaatgttattttaggtcgtatgataccagtgggtactggactttatcaagatagaaaa
gttaagatcagaacaaactaa
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integrated database retrieval system
