Chryseobacterium sp. StRB126: CHSO_0230
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Entry
CHSO_0230 CDS
T03602
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chz
Chryseobacterium sp. StRB126
Pathway
chz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHSO_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chz03400
]
CHSO_0230
Enzymes [BR:
chz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHSO_0230
DNA repair and recombination proteins [BR:
chz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CHSO_0230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Latarcin
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
BAP29267
UniProt:
A0A077KC12
LinkDB
All DBs
Position
complement(260942..264310)
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLMQKEFGKEIFTQLENSEHVSVRGSAGSSVSVFVAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQTDFVSEPGEF
SVRGGIVDVFSYSYEKPYRITFFGNEVENIKTFDIETQLSVDKVKDFQLVSNMNFSVTGS
RVSLLQLLPKESYVISKNGMVGMQKIKIFYEKSLEKFETLSKDIAHRAPQELFISDQEFL
FDYKKFKTIDFGNAVIEGLKDIAEIKMEQLPQPSFHKNFELLIEDMEEKQKDGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKLLVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREIVLSKLGSPAWKSLKQKTKAKVKQIAFDLIQLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATVDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLDALKNG
KVDIIIGTHQLVSSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEILRDAISYEIQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMDGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTADARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFENLFENEEDR
QKLFKSVKDVNIDTDLELMLPDFYISNTEERLLLYQKIAEINNEKDIHQFELELIDRFGA
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPSNPQDKFYQTDRFRHIINYLTK
NPAEAQLKEKAGKEGNQLMMRKERVKNVDEVNILLKAIIEHN
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaatgaaaagttcctgccggatcttatgcaaaaagaattcggg
aaagaaatttttacccaattagaaaatagtgaacatgtttccgtgaggggaagtgcggga
tcttcagtttctgtttttgtggctgagctttttttggttcagaaaaaaaatattctttat
ctggtagatgataaagaggatgcattgtatgccaatactgaaatggaagatttgctgggg
aaagaaaaagtactgtattttccggctacccaccttgagccttaccaggtagaaaagaca
cagaatgctaatcttgtgttgagaactgaagtgctgaataaaataaactccggaagatct
ccaaaagtaattgttgcctatgctggagctttatcagaaaaggtattaaagaaagaagac
tttaaagctatttctcatcatataaaagtaggggatcagcttgattttgattttgtggat
gagctgcttaatcattatcattttcagcaaacagattttgtttcagaaccaggagaattt
tctgtaagaggtggaattgtagatgtattctcttattcctacgaaaagccctacagaatt
acgttctttggtaatgaggttgaaaatattaaaacgtttgatatagaaactcagctttcg
gtagataaagtgaaagattttcagttggtatccaatatgaatttctcggttacgggaagc
agggtttcattgctgcagctgctgcctaaggaaagttatgtgatttccaaaaacggaatg
gtaggaatgcagaagattaaaatattctatgaaaagtccctggaaaagtttgaaacatta
agtaaagatattgctcatagagctccacaggaactctttatttctgatcaggagttttta
tttgattataaaaaattcaaaaccattgactttggaaatgcggttattgaaggattaaag
gatattgctgaaattaaaatggagcagcttccacaaccttctttccataaaaactttgag
cttttgattgaagatatggaagaaaagcagaaagacggatttgatacctggatttcattt
tcaacggaaaaacagaaagaaaggcttgaatctatctttgaagagcttgaacatgaactt
ccttttaaaagctttaagtctgaattgcatgaagggtttgtagacaatggacataaactt
ttggtatataccgatcaccagatctttgaccgttatcagagatataaagctaaaaatacc
tttgcaaaatcagaacagcttaccctgaaagacctgatgagcttgaagattggagactat
attgcccatattgatcatggaatcgggaaatttatgggattggtgaaggtaaataatgac
ggaaagattcaggaatgttttaaactgacctataaaaacggagatttactatatgtaagc
attcattcattacataagatctccaaatataacggacctgatggaagagagattgtgtta
agcaaacttggttctccagcatggaagtcgttaaagcaaaaaacgaaagctaaggtaaaa
cagattgcatttgaccttatacagctatacgcccaaagaaaaacggcaaaaggatttgct
tacacaccagattcttacctgcagaatgagctggaagcaagttttatttacgaagatact
ccggatcaggaaaaagctactgtagatgtgaaaaaagatatggaagcggatacggtgatg
gaccggctggtttgtggtgatgtaggattcggtaaaacggaggtcgcaattcgcgctgca
tttaaggccgctacagatggtaaacaggtggcggtattggttcctactactattctggca
ttccagcattacagaagctttaaggaaaggcttaaagattttccggtcaatgttgcctat
gttaacaggttcagaacggctaagcagaagtctgaaactctggatgcattgaaaaacgga
aaagtagatattattattggaacgcatcagttggtgagcagttcggttaaatttaaagat
cttggattattgattattgatgaggaacacaagttcggtgtttctgtaaaagataagctg
aagacgcttaaaaataatgtagatacgcttacattaaccgcaaccccaattccaagaaca
ttgcagttctctctaatggcggcaagagatttatctgtcattaaaacgccgccacccaac
aggcagccggtagatacccaactgataggtttcaatgaagagatacttcgggatgctatt
tcttatgaaattcagagagacgggcaggtgtattttattaacaacaggattgaaaacctt
aaagatattgccggacttatccagcgcctggttcctgatgcaagggtgattaccgggcat
ggccagatggatggtaaacagttggagaaaaatgttctggatttcatggaaggaaagtat
gatgtacttgtttctactaccattgtcgaaagtggggtagatgttccaaatgccaataca
atctttatcaacgatgctcaacgattcggaatggcagatcttcatcagatgagaggaagg
gtaggacgaagcaacaggaaagctttctgttatctgattactccgccttatgatatgatg
acagcagatgccagaaaacgtttggaagctattgaacagttttctgatcttggaagtggt
ttccagattgcaatgaaagatctagagattcgtggtgccggagatttattaggtgcagag
cagagtgggtttatcaatgagatgggttttgaaacctatcagaaactaatgcaggaagct
cttgaagaattgaaagatgatgctgattttgaaaatttatttgaaaacgaagaagacaga
caaaaacttttcaaatctgtaaaagatgttaatattgatacagatttggaattgatgctg
ccagatttctatatttctaatacagaagagagattgctgctgtatcagaaaatcgcagag
attaataatgaaaaagatattcatcagtttgaacttgaactgattgatagatttggggca
ttgccaaaagaagctgtgaatctgttgaaaagtgtttccttaaaatggctggctgcagat
ataggttttgaaaagattgtaatgaaaaatggtgtattcttaggatacttcccgagcaat
cctcaggataaattctatcagacagacagatttaggcatatcattaattatctgacaaaa
aatcctgctgaagctcagctcaaggagaaagccggtaaggaagggaatcagctgatgatg
agaaaagaaagggtgaaaaatgtagatgaggttaatatcttactaaaagctatcattgaa
cataattaa
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