Chryseobacterium sp. StRB126: CHSO_1278
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Entry
CHSO_1278 CDS
T03602
Name
(GenBank) DNA polymerase i
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
chz
Chryseobacterium sp. StRB126
Pathway
chz03030
DNA replication
chz03410
Base excision repair
chz03420
Nucleotide excision repair
chz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHSO_1278
03410 Base excision repair
CHSO_1278
03420 Nucleotide excision repair
CHSO_1278
03440 Homologous recombination
CHSO_1278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chz03032
]
CHSO_1278
03400 DNA repair and recombination proteins [BR:
chz03400
]
CHSO_1278
Enzymes [BR:
chz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHSO_1278
DNA replication proteins [BR:
chz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CHSO_1278
DNA repair and recombination proteins [BR:
chz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CHSO_1278
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHSO_1278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
DUF2202
DUF1198
Motif
Other DBs
NCBI-ProteinID:
BAP30315
LinkDB
All DBs
Position
1462247..1465084
Genome browser
AA seq
945 aa
AA seq
DB search
MDATQDKRLFLIDAYAMIFRGYYALIRNPRLTSTGLDTSAIFGFTNSLIELIRREKPTHL
AVVFDVGRASVRTDDFADYKANRSETPEAIKIAVPYIHRILEGMHIPILGVEGYEADDVI
GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIEDP
KQVIDYLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGSIENLLANTDQLKGKLKEKVEASA
ERGILSKKLATIICDVPVEFHQEQYDLETPDFEKVKEVFEEIEFRRLYENLYRAFAPAAT
EIAVVSEVEVKQAAPAGTEVKGQAMQLDLFANFEELDQATSTKSSIEHNDHFYQFIDNPK
AQKKLVDNLLKQKTVCFDTETTSLNELEAELVGMSFSYKKGLAYYIPLSENREEVLQTLE
IFRPFFEKEDLLKIAHNLKFDYKILKQYDITVKGAMFDTMIAHYLLNPDGRHGMDYLSEV
YLNYKPVSIETIIGKKGKKQGTFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLEE
LFFNIEMPLMEVLAKMELAGISLDEKWLAQESIDLENDLRELEKTIFKLSEEEFNMNSPK
QLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLASKHEIIKHILEYRTYQKLKSTYVDA
LPSQIDKLDNRVHTNFSQTTAATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIIS
ADYSQIELRLIAEISGEDNMIKAFQDGEDIHASTAAKLFKVPLAEVSKTQRSQAKTVNFG
IIYGQGAFALAEQTGLSRTEAKQMIEAYFETYPKLKEYMAEQVNKARQMGYVETILGRKR
HLKDINSNNFVVRGHAERNAVNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDE
LVFEAPAEEVEAASKLIKTEMENALKTQVPLLVEIGVGDNWLEAH
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaacacaagataaaaggctgtttctcatcgatgcttacgcgatgattttcaga
ggatattacgcattgataaggaatccgagattaaccagtactggtttggatacctctgcc
atctttggctttaccaactcattgatcgaattgatcagaagagaaaaacccacccatttg
gctgttgtttttgatgtaggaagagcaagcgtaagaaccgatgatttcgcagactataaa
gctaacagaagtgaaactcctgaagccattaaaattgcagtcccatacattcacaggatt
ctggaaggaatgcatattccaattcttggggttgaagggtatgaagcggatgatgtaata
ggtactattgcctgcaaagccgaaaaagaagggtataccacattcatggtaacacctgat
aaagactttgcacagctggttacagataaaatcaaaatttataagccgggattaaaaggt
ggtgatatcgaaattctgggtgtagaagaagtgaaagccaaatatgagatcgaagaccct
aagcaggttatcgattatctggctatgatgggagatgcggtggataatatccctggattg
gaaggggtaggagagaaaaccgccatgaaattccttaaagaattcggaagtattgaaaac
ctgttggccaatacagatcaactaaaaggaaaacttaaagaaaaagtagaagcttctgca
gagcgtggaattctatcaaaaaaactagccactattatttgtgatgtccctgttgaattc
catcaggaacaatatgatcttgaaactcctgactttgaaaaagtaaaagaagtctttgaa
gaaatagagttccgaagactgtatgaaaacctttacagagcatttgctcctgcagctaca
gaaatagctgtagtaagcgaagtagaagtaaagcaggcagctccggcaggaacagaagta
aaagggcaggcaatgcaacttgacctttttgctaatttcgaggagttggatcaggcaacc
tctacaaaatcttccattgagcataatgaccacttttatcagtttatagacaatccgaaa
gctcaaaaaaaactggtagacaatctgctaaagcaaaaaacggtctgttttgatacagaa
actacttcattaaacgagctggaagcagaactggtaggaatgagtttctcctataaaaaa
ggattggcatattatatccctttatccgaaaacagagaagaagttttgcagacgcttgaa
atcttcagaccgttttttgaaaaagaagatttactgaaaatagcccacaacctaaaattc
gattataaaatattaaaacagtacgacatcaccgttaaaggagcgatgtttgatacgatg
attgcccattatctgttgaatcctgacggaagacacggaatggattatctttctgaggta
tacctgaattataaacctgtttccattgaaaccattatcgggaagaaaggaaaaaaacag
ggaacattcagagatgctgatctgagaactcagaccgattatgctgccgaagatgcagat
gtaaccttccagttgtatgaactgtttgccccacaactgaaaaaggaaaatctggaagaa
cttttcttcaatattgaaatgcctttgatggaagttttggcgaaaatggaacttgccgga
atttctttagacgaaaaatggctggcacaggaaagtattgaccttgaaaatgatctgaga
gagctggaaaaaacaatttttaaactttcagaagaagaattcaatatgaattcacctaaa
cagttaggggaaattctgtttgaaaaaatgcagcttgatccgaaagctaaaaagaccaaa
acaggtcagtacgctacctcggaagatgtacttcaaaaactcgcttcaaagcatgagatc
atcaaacatattctggaatacagaacctatcagaaattaaaatcaacctatgtagatgcg
ttgccttcacagattgataaattagataacagagtacacaccaatttctctcaaaccaca
gcagcaacgggccgtctcgcaagtgtgaatccgaatctgcagaatattccgatcagaaca
ttgagagggcagcagattcgtggagcctttgtttcaggagaaggaaagaagatcatctct
gccgattactcacaaattgaacttcgcctgatcgctgaaatttcaggagaagacaatatg
attaaagcattccaggatggagaagatattcacgcttctactgcggcgaaactctttaaa
gttcctttagctgaagtttcaaaaactcagagaagccaggctaaaaccgtaaactttggg
atcatatacggacagggagcttttgctttagctgagcaaaccggattatcccgtacagaa
gctaagcagatgattgaagcctattttgaaacctatccgaaactgaaagaatatatggca
gaacaggtgaacaaagcccgtcagatgggatatgttgaaaccattctgggaagaaaacgt
catttaaaagatattaattccaataattttgtagtgagaggacacgcagaaagaaacgcg
gtaaatgctccggtacaaggaagtgcagccgatattgtgaaaattgctatgattaaaata
gaccgtgaactggaagaacagcaattaaaaacaaaaatgctgcttcaggtacatgacgaa
ttggtattcgaagctccggcagaagaagttgaggcagcttcaaaattaattaaaaccgaa
atggaaaatgccttgaaaacacaggttccgttattggtagaaattggagtaggggataac
tggctggaagcccattaa
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