Chryseobacterium sp. StRB126: CHSO_2971
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Entry
CHSO_2971 CDS
T03602
Name
(GenBank) ATP-dependent DNA helicase recq
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chz
Chryseobacterium sp. StRB126
Pathway
chz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHSO_2971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chz03019
]
CHSO_2971
03400 DNA repair and recombination proteins [BR:
chz03400
]
CHSO_2971
Enzymes [BR:
chz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHSO_2971
Messenger RNA biogenesis [BR:
chz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHSO_2971
DNA repair and recombination proteins [BR:
chz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHSO_2971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
BAP32008
UniProt:
A0A077KLN5
LinkDB
All DBs
Position
complement(3363630..3365834)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIENLLNGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSEDGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKDDYLDFLKEVKISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIASVPVIALTA
TATPKVQDDIQKTLGMTNALVFKESFNRPNLYYEVCPKINIDKEIVKFVNQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDIIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGESFDPVNGDGANMCDNSSNPPKLKDATADLTKA
LELIKDTGEKFKSKDLISVIVGKENAVTKSYKLEQNRYFGFGKEEKDNYWKTILRQATVQ
NFLQKDIETYGVLKITEKAKKVLDGKSKDVFLIAEDREFDLTQAKADSDQLQQQAGGGLD
QKLFNLLKELRKKVAKKHGIPPYTVFMDPSLEDMTVQYPITADEINKIYGVGEGKAKKYG
KEFADYIKTYVEDNNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMEE
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMNESESDSMKILLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgaattgaaaaagtattttgggttttctaca
tttaagggacagcaggaacagattatagaaaacctattgaatgggaaggatatatttgta
ttgatgcctacaggtggtggtaaatcattatgttatcagcttccggcacttatttcggag
ggaacagcaatagttgtttcacctttaatagcgttaatgaagaatcaggtggatgccgta
aacggactttcatccgaggatggggtagcgcatgtattgaattcatcattaaacaagaca
cagacaaaacaggttttcgacgatattaaaagtggaaaaaccaagcttttgtatgtagct
ccagaatcattgattaaagatgattatcttgactttttaaaagaagttaagatttctttc
tttgctattgatgaggctcactgtatttcagagtggggacatgatttcagaccggaatac
aggaaccttaaacagattattgataagattgccagtgtaccggtgattgctcttacagct
acagctacgccgaaggtgcaggatgacattcagaaaacactaggcatgaccaatgctttg
gtctttaaagaaagtttcaaccgtccgaatctatattatgaggtatgtcctaaaattaat
atagataaggagattgttaaattcgttaatcagcataaaggaaaatcagggatcgtctat
tgtctgagcagaagaaaagtggaagaatttgcccagcttttgcaggtgaatggaattaat
gcccttccttaccatgccggacttgatcagaaagtaagagtggccaatcaggataaattc
ttgatggaagaagttgatatcatcgtagctaccattgcattcggaatgggaattgataag
ccggatgtacgttttgtcattcactatgatttcccgaagtctttggaaagttattatcag
gaaaccgggagagcaggaagagatggtggtgaaggccattgccttgcattctatgatcct
aaagatattgagaagctggaaaaatttctggctcaaaaacctgtgtccgaaagagaaatt
ggattacagcttttaaatgaagtagtaggttatgctgaaacttccatgagcagaagacaa
tatattctttattattttggagaaagttttgatccagtgaatggagacggagcgaatatg
tgtgataactcatctaaccctccaaaattaaaagatgccacagcggatttaacaaaagct
cttgaactgattaaagatactggcgaaaaatttaaatcaaaagatctgatttccgttatc
gtaggaaaagaaaacgcagttaccaagtcttataaactggaacagaaccgttatttcggt
tttggtaaagaagaaaaagataactattggaagacgattctaagacaggcaaccgttcag
aatttcttacagaaagatattgaaacgtatggcgttctaaagattactgaaaaagccaaa
aaggtattagatggtaaatctaaggatgttttcttaattgccgaagacagagaatttgat
cttactcaagctaaagcagatagtgatcagctgcagcagcaggccggaggcggtttagac
caaaaactatttaatctattaaaggaattaaggaaaaaagtagccaaaaaacacggaatt
ccaccctatacggtatttatggatccaagtttggaagatatgacggttcaatatccgatt
acagcagatgaaatcaataagatttatggagtaggagaaggaaaagctaaaaaatatggt
aaagaatttgctgactacattaaaacatatgttgaggacaacaatatagaacgtacccag
gacatggtattgaaacaggtggctaataaatccagccataaggttttcattatccaaagc
acagataaaaagattgatcttgaagatattgcaagagctaaaaacctttctatggaagag
cttttgaaagaaatggaaagaatcgtttatcagggaacaaaacttaatattgattattat
attgaagataattttgatgaagacattgtagacggctttatggagtttatgaatgaatct
gagagtgacagtatgaagatcttattggatgaattcggagatgagttgtctgatgaagaa
gtaagaatgctgagaattaaatttatcagtgatgttgccaattaa
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