Clostridium isatidis: BEN51_09215
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Entry
BEN51_09215 CDS
T05663
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cia
Clostridium isatidis
Pathway
cia02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cia00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BEN51_09215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cia03021
]
BEN51_09215
Transcription machinery [BR:
cia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BEN51_09215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
DUF5486
Motif
Other DBs
NCBI-ProteinID:
ASW43651
UniProt:
A0A343JDP3
LinkDB
All DBs
Position
complement(1947858..1948967)
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AA seq
369 aa
AA seq
DB search
MVDGKTKAKDSKKDSETKNSKMAIVKNLLDKAKNKGSITYKEMMDEIDHIELTPEQIEKI
YEVLESMGIEIIGDEISEENIEEEDLDLSIPEGIAIDDPVRMYLKEIGKVPLLSSEEEIE
LATRIEQGDEKAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRK
GFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQELGRDPHPEEI
AEIMELPVEKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPAEAAAFTMLKEQ
LINVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSR
SKKLKDYLD
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atggtagatggaaaaacaaaagctaaggacagtaaaaaagacagtgaaacaaaaaatagt
aaaatggcaatagttaaaaatctactagataaagcaaagaacaagggttctataacatat
aaggaaatgatggatgaaattgatcatatagaattaactcctgaacaaatagaaaaaatc
tatgaagtattagaatctatgggaatagaaattattggtgatgaaatttctgaagagaat
attgaggaagaagatttagatttaagtattccagaagggattgcaatagatgatccagta
agaatgtatttaaaagaaataggaaaagttcctttactatcctcagaggaggaaatagaa
ttagcaacaagaatagaacaaggtgatgaaaaggctaaaaagaaattagcagaagcaaac
cttagactagtagttagtatagctaaaagatatgttggaaggggaatgttattcttagat
ttaattcaagaaggaaacttggggcttataaaagcagtagaaaagtttgattatagaaaa
ggctttaaattttctacatatgctacatggtggataaggcaagcaataacaagagcaatt
gcagatcaagcaagaactattagaatccctgttcatatggttgaaacaattaataaatta
attagaattcaacgtcaattattacaagaattaggaagggatcctcatccagaagaaatt
gctgaaattatggaacttccagttgaaaaggtaagagaaattcaaaaaatagctcaagag
ccagtatctcttgaaacaccaattggtgaagaagaagattcgcatcttggagattttata
ccagacgatgatgccttagcaccagcagaagctgccgcttttacaatgcttaaggaacaa
ctaataaatgtattagatactctaacacctagagaagaaaaggtgttaagattaagattc
ggtctagatgatggtagagcaagaactcttgaagaagtaggaaaagagtttaatgtaaca
agagaaagaataagacaaattgaagcaaaggctcttagaaaattaagacacccttcaaga
agtaaaaaattaaaggattatttagattag
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