Clostridium isatidis: BEN51_09615
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Entry
BEN51_09615 CDS
T05663
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cia
Clostridium isatidis
Pathway
cia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEN51_09615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cia03019
]
BEN51_09615
03009 Ribosome biogenesis [BR:
cia03009
]
BEN51_09615
Enzymes [BR:
cia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BEN51_09615
Messenger RNA biogenesis [BR:
cia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BEN51_09615
Ribosome biogenesis [BR:
cia03009
]
Prokaryotic type
rRNA helicases
BEN51_09615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_22
Flavi_DEAD
DBL_C
Motif
Other DBs
NCBI-ProteinID:
ASW43729
UniProt:
A0A343JDX1
LinkDB
All DBs
Position
complement(2040193..2041635)
Genome browser
AA seq
480 aa
AA seq
DB search
MNKFENMTLAPEILKALKNLGFEEASEVQKEIIPKFLAGKDLVVKSQTGSGKTASFGIPL
CELIDSNENKVKGLVLVPTRELALQVKEDISNIGRLKKIRVAAIFGKQSFKEQVLELKQR
VHIISGTPGRVADHIERGNLNPDFIEYVVIDEADKMLSMGFIDQISEILKMLPNIKNTYL
FSATIPEEIEKLYTNYMKTPEIISVKSKVFNRDKIKEKYINVDKDDKFKILLKLLYRYTD
ESAIIFCNTKETVKNLFNNLKREKIKVHELHGDMDQKDRLKTMESFKNREFKVLVATDIA
ARGIHINHITNVYNYDIPMEKESYVHRIGRSGRGEKEGLAISLVGNREKRFFEDIEEYIG
YKIDKISLPSYEEMIEGRKKFYENQKSLYENKIISKKDVHKEVTKIYLSAGKKKKIRNID
ILGALSNLDILNGKDIGIIDIQDGHSYVDILNGKGKILLEKYKEIKLKGKTVKISLAKNR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatttgaaaatatgactttagctcctgaaatcttaaaagctttaaaaaattta
ggttttgaggaagcttctgaagttcaaaaagaaataataccaaagtttttagcaggaaag
gatttagttgtaaaatctcagactggaagtggtaaaactgcaagttttggaattccgtta
tgtgaacttattgacagtaatgaaaataaagtaaaaggtcttgtgttagttcctacaaga
gaattagctctgcaagtaaaggaggatatatcaaatattgggcgattaaaaaagataaga
gtagctgctatttttggaaaacaatcctttaaagaacaagttttagagttaaagcagcgt
gttcacattatttctggaactcctggaagagtagcagatcacatagaaagaggaaattta
aatcctgattttatagaatatgtcgttattgatgaagcggataaaatgttaagtatgggg
tttatagatcaaatttctgaaatattaaaaatgctgcctaatatcaaaaatacttattta
ttttcagctacaattccggaagaaatagaaaagttatatactaattatatgaaaactcca
gaaataatttccgtaaaatctaaggtttttaatagagataaaataaaagaaaaatatata
aatgtagataaagatgataaatttaaaattctcttaaagcttctttatagatatacagat
gaatcagcaataatattttgtaatactaaggaaacagtaaaaaatctttttaataattta
aaaagagagaagataaaagtgcatgagcttcatggggatatggatcaaaaagatagatta
aaaactatggaaagctttaaaaatagagaatttaaggtattagtagctacagatatagca
gcaaggggaatacatataaatcacattaccaatgtatataattatgatattccaatggaa
aaggaaagctatgttcatagaataggaagaagtggaagaggggaaaaggaaggattagca
atttctttagttggtaatagagaaaaaagattttttgaagatatagaagagtatattggt
tataaaatagataaaattagtttgccatcttatgaagaaatgatagaaggaagaaaaaaa
ttctatgaaaatcaaaaatcattatatgaaaataaaattataagcaaaaaagatgtacat
aaagaagttacaaaaatatatttatcagcaggcaaaaagaagaaaattagaaatatagat
attttaggagccttgagcaatttagatattcttaatggtaaggatattgggattattgat
atacaagatgggcattcttatgttgatattttaaatggaaaaggaaaaattttactcgag
aaatataaggaaataaaattaaaaggcaaaactgtaaagataagcctagctaaaaataga
taa
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