Clostridium isatidis: BEN51_13150
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Entry
BEN51_13150 CDS
T05663
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cia
Clostridium isatidis
Pathway
cia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BEN51_13150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cia03019
]
BEN51_13150
03009 Ribosome biogenesis [BR:
cia03009
]
BEN51_13150
Enzymes [BR:
cia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BEN51_13150
Messenger RNA biogenesis [BR:
cia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BEN51_13150
Ribosome biogenesis [BR:
cia03009
]
Prokaryotic type
rRNA helicases
BEN51_13150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RRM_9
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASW44342
UniProt:
A0A343JFN4
LinkDB
All DBs
Position
2793092..2794675
Genome browser
AA seq
527 aa
AA seq
DB search
MNEIKFSDLGLKDTLLKSITEMGFEKPSQIQAEAIPIALEGYDIIGQAQTGTGKTAAFGC
TIINGISKKDGLSAIILSPTRELAIQVHDELRRLSKYDNLNILAIYGGDSISYQIKALKG
NVNIVVGTPGRLLDHIRRKTLSLDNIKYLVLDEADEMLNMGFIDDLEEIIKQVPSERQTL
LFSATMPDPIKKLAKRYLKKDVKHVAIKKTSMTVSKISQSYFEVAHKSRFEALCRILDFD
QPKSSMIFCKTKKGVDELVECMQARGYVVEGMHGDMSQAQRLRTLKKFKEGSLNFLVATD
VAARGIDVEGVTHVINYDLPQDVESYVHRIGRTGRANREGIAYSLVSPKEYPMLKQIISV
TKSEINRKKVPTVDEIFKNKSNNLLKEVADNIEASDNERFIPIAKKLAEKYDAVDVIAAL
MKSSFKDDLFEFYSSNELKAPKADSEYVRLFFSIGRRDGITPKTIINFIKDNARIKTSHI
GDIDILENFSFVNVSPDNKDKVLNKCMGVKFNRRKVNIEVANKKKKR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaattaaatttagtgatttagggcttaaggatacccttttaaaatctataaca
gaaatgggttttgaaaaaccatctcaaatacaagcagaagctattcccattgctttagaa
ggatatgacattataggtcaagctcaaacaggtactggtaaaacagctgcctttggctgt
actataattaacggaatttctaagaaagatggacttagtgctataatactatctccaaca
agggaattagctattcaggttcatgatgagcttagaagattatcaaaatatgataactta
aatatattagctatttacggcggagattcaatatcgtatcaaataaaagcattaaaagga
aatgtaaatatagttgttggtactccaggaaggttattagatcatataagaaggaaaact
ttatctttagataatattaaatatttagttttagatgaagctgatgaaatgttaaatatg
ggcttcatagatgatctagaagaaataattaagcaggtgccatcagagaggcaaacttta
ctattttcagcaacaatgcctgatccaattaaaaagcttgcaaaacgttatttaaagaaa
gatgttaaacatgtcgctattaagaagacttcaatgacggtttctaaaataagccaaagt
tattttgaggtagctcataaatcaagatttgaggctttatgcagaatcttagattttgat
cagccaaaatcatcaatgatattctgtaagacaaaaaaaggcgttgatgaattagttgaa
tgtatgcaggcaagaggctatgtagttgaaggtatgcatggagatatgtctcaagctcaa
agattaagaactttaaagaaatttaaagaaggttctttaaactttttagttgcaactgat
gttgctgcaagaggtatagatgttgaaggagtaactcatgttattaactatgacttgcct
caagatgtagaaagctatgtacatagaattggtagaacaggtagagctaatagagaagga
attgcctattctctagtatcacctaaagaatatcctatgttaaagcaaataataagcgtt
actaagagtgaaatcaatagaaagaaagttccaactgtagatgaaatatttaagaataaa
tctaataatctattaaaggaagttgctgataatattgaagcttcagataacgaaagattt
ataccaatagcaaaaaaattagcagaaaaatacgatgctgttgatgtaattgctgcctta
atgaagagcagttttaaagatgatttgtttgaattttatagttctaatgaattaaaggct
ccaaaagctgattctgaatatgtgcgtttattcttctctataggtagaagagatggaatt
actcctaaaactataattaactttattaaagataatgctagaattaaaacatcacatatt
ggagatattgatatattagaaaacttctcctttgtaaatgttagtccagataataaagat
aaggtcctaaataaatgtatgggagttaaatttaacagaagaaaagttaatattgaagta
gctaataagaagaaaaaaagatag
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