Citrobacter sp. TSA-1: HF677_000020
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Entry
HF677_000020 CDS
T09275
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cib03032
]
HF677_000020 (gyrB)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_000020 (gyrB)
Enzymes [BR:
cib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HF677_000020 (gyrB)
DNA replication proteins [BR:
cib03032
]
Prokaryotic type
DNA Topoisomerases
HF677_000020 (gyrB)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HF677_000020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
GyrB_hook
Toprim
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
QKE18126
LinkDB
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Position
3611..6025
Genome browser
AA seq
804 aa
AA seq
DB search
MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKDIV
VTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSQKLELVIRREGKVHQQTYVHGVPQAPLAVTGETEATGTQVRFWPSHETFTNVV
EFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNI
FYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE
GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLSEY
LLENPSDAKIVVGKIIDAARAREAARRAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG
KQEQYIKDDEAMDQYQISIALDGATLHTNASAPALSGESLEKLVSEYNATQKMIGRMERR
FPKALLKELVYQPTLPEADLANEQTVTRWVNSLITELNEKEQHGSLWKFDIHHNAEQNLF
EPIVRVRTHGVDTDYILDHEFVTGGEYRRICTLGEKLRGLIEDDAFIERGERRQPVASFE
QALEWLQKESRRGLAIQRYKGLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctccagtatcaaagtcctgaaaggactggatgcggtgcgt
aagcgcccgggtatgtatatcggcgacacggatgacggcaccggtctgcaccacatggta
ttcgaggtggtagataacgctatcgacgaagcgctcgcgggtcactgtaaagatatcgtt
gtaacgattcacgctgacaactccgtgtccgttaccgatgatggccgtggtatcccaacc
ggtattcacccggaagagggcgtttcggcggcggaagttatcatgaccgttctgcacgca
ggcggtaaattcgatgataactcctataaagtttccggtggtctgcacggcgtaggtgtg
tccgtagtaaacgccctgtcacagaaactggagctggtgattcgtcgtgaaggcaaagtg
catcagcaaacttacgtgcacggtgtgccgcaggcgccgctggcggtaaccggcgaaaca
gaagcgacgggtactcaggtacgtttctggccaagccacgaaacctttaccaatgtcgtt
gagtttgaatatgagattctggctaagcgtctgcgcgagctgtcgttcctgaactccggc
gtctccattcgtctgcgcgacaagcgcgacggtaaagaagaccatttccactacgaaggc
ggcattaaggcgtttgttgaatacctcaacaaaaacaaaacgccgatccacccgaatatc
ttctacttctccaccgaaaaagacggtattggcgttgaagttgcgctgcagtggaacgat
ggtttccaggaaaacatctactgcttcaccaacaacattccgcagcgtgacggcggtact
cacctggcaggcttccgtgcggcgatgacccgtaccctgaacgcctacatggataaagaa
ggctacagcaaaaaagctaaagtcagcgccactggtgacgatgcccgtgaaggcctgatt
gccgttgtttccgtgaaagtaccggatccgaagttctcctcacagaccaaagacaagctg
gtctcctctgaggtgaaatcggcggtagaacagcagatgaacgaactgctgagcgaatac
ctgctggaaaacccgtctgacgcgaaaatcgtcgttggcaaaattattgatgctgcacgt
gcccgtgaagcggcacgtcgcgcgcgtgaaatgacccgtcgtaaaggcgcgctggactta
gcgggtctgccgggcaagctggcggactgtcaggaacgcgacccggcgctgtccgaactg
taccttgtggaaggggactccgcgggcggttctgcgaagcagggccgtaaccgtaaaaac
caggcgattctgccgctgaagggtaaaatcctcaacgtcgagaaagcgcgctttgataaa
atgctctcttctcaggaagtggcaacgctgatcaccgcgctcggctgtggcatcggtcgt
gacgagtacaacccggacaaactgcgttatcacagcatcatcatcatgaccgatgcggac
gtcgacggctcgcatattcgtacgctgctgttgaccttcttctatcgtcagatgccggaa
atcgtggaacgcggccacgtttacattgcacagccaccgctgtacaaagtgaaaaaaggt
aagcaggaacagtacattaaagatgacgaagcgatggatcagtaccaaatttctatcgct
ctggatggcgcaacgctacacactaatgccagcgcacctgctctttcaggtgagtcgtta
gaaaaactggtttctgaatacaacgcgacgcagaaaatgattggccgtatggaacgtcgt
ttcccgaaagcgctgctgaaagaactggtttatcaaccgacgctgccggaagctgatttg
gcgaacgagcagaccgttacccgctgggttaattcgttgattaccgagctgaacgaaaaa
gaacagcacggcagcctgtggaagtttgatatccaccacaacgcagagcagaacctgttt
gagccgattgtgcgcgtccgtactcacggtgtggataccgactatattctggatcacgag
tttgtgaccggtggcgaataccgtcgtatttgtacgctcggtgagaagctgcgcgggctg
atcgaagacgatgcgtttatcgaacgtggcgagcgccgccagccggttgccagctttgag
caggcgctggaatggctgcagaaagagtcacgtcgcggcctcgctatccagcgttataaa
ggtctgggcgagatgaacccggatcagctgtgggaaaccaccatggatccggaaagccgt
cgtatgctgcgcgttaccgtgaaggatgcgattgccgccgaccagctcttcactacgctg
atgggcgatgccgttgaaccgcgtcgcgcgtttatcgaagaaaacgccctgaaagcggcg
aacatcgatatctaa
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