Citrobacter sp. TSA-1: HF677_002580
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Entry
HF677_002580 CDS
T09275
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF677_002580 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cib03019
]
HF677_002580 (pnp)
03016 Transfer RNA biogenesis [BR:
cib03016
]
HF677_002580 (pnp)
Enzymes [BR:
cib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HF677_002580 (pnp)
Messenger RNA biogenesis [BR:
cib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HF677_002580 (pnp)
Transfer RNA biogenesis [BR:
cib03016
]
Prokaryotic type
tRNA degradation factors
HF677_002580 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
OB_RRP5_4th
KH_2
OB_PDCD11
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QKE18611
LinkDB
All DBs
Position
536261..538393
Genome browser
AA seq
710 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALTLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVA
GTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINELAKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSETIATLVAEDETLDANELGEILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTTR
DAQNLDELMGERTDNFLFHYNFPPYCVGETGMVGSPKRREIGHGRLAKRGVLAVMPELDK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQA
INAPRGDISQFAPRIHTIKISPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAGEPEAPVSQGE
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggtcagcataccgttacgctggaaacc
ggcatgatggcgcgtcaggcgactgccgctgttatggttagcatggatgacactgcggta
ttcgttaccgttgttggccagaaaaaagcgaaaccaggccaggactttttcccactgacc
gttaactatcaggagcgtacctacgctgctggccgtatcccgggtagcttcttccgtcgt
gaaggccgtccgagtgaaggcgaaactctgatcgcgcgtctgattgaccgcccggttcgc
ccgctgttcccggaaggcttcgttaacgaagttcaggttatcgcgaccgttgtttccgtt
aacccgcaggttaacccggatatcgtggcaatgattggtgcatctgctgcgctgactctg
tctggtatcccgttcaacggcccgatcggtgctgcacgtgttggttacatcaatgaccag
tacgtactgaacccgactcaggacgaactgaaagaaagcaagctggacctggttgttgct
ggtactgaagctgccgtactgatggttgaatccgaagctgaactgctgagcgaagaccag
atgctgggcgctgtagtattcggccacgaacagcagcaggttgttattcaggctatcaac
gagctggcgaaagaagctggcaaaccgcgttgggactggcagccagaagccgtcaacgaa
gcgctgaacgcacgcgttgccgcactggcagaagctcgtctgagcgatgcttaccgtatc
actgacaaacaagagcgttacgctcaggttgacgtgatcaaatctgaaaccatcgcgact
ctggtggctgaagacgaaaccctggacgctaacgaactgggtgaaatcctgcacgctatc
gagaaaaatgttgttcgtagccgcgtactggcaggcgagccgcgtatcgatggtcgtgaa
aaagatatgatccgtggtctggacgtgcgtactggcgttctgccgcgtacccacggttcc
gcactgttcacccgtggtgaaactcaggcgctggttactgcgaccctgggcaccactcgt
gatgcgcagaaccttgacgagctgatgggcgagcgtactgacaacttcctgttccactac
aacttccctccgtactgcgtaggtgaaaccggtatggtcggttctccgaagcgtcgtgag
attggtcacggtcgtctggcgaagcgtggcgtactggcagtgatgccggaactggataaa
ttcccgtacaccgtacgtgtggtttctgaaatcaccgaatctaacggttcttcttccatg
gcttccgtatgtggtgcttctctggcgctgatggacgcaggcgtgccgatcaaagccgcc
gttgcgggtatcgcgatgggtctggtgaaagaaggcgacaactttgttgttctgtctgac
atcctgggcgacgaagaccacctgggcgatatggacttcaaagtggcgggttcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggtatcaccaaagagatcatgcag
gttgctctgaaccaggctaaaggtgcgcgtctgcacatcctgggtgtgatggaacaagcg
atcaacgcaccgcgtggtgacatttctcagttcgctccgcgtatccacaccatcaagatc
agcccggacaagatcaaagacgttatcggtaaaggcggttctgttatccgtgctctgacc
gaagaaaccggcaccaccattgaaattgaagatgatggtactgtgaagattgctgcgacc
gacggcgagaaagcgaaatatgctatccgtcgtatcgaagagatcaccgcagagatcgaa
gtaggccgtatctacaatggtaaagtgacccgtatcgttgactttggcgcattcgttgcc
attggtggcggtaaagaaggtctggtacacatctctcagatcgctgacaaacgcgttgag
aaagtgaccgattacctgcagatgggccaggaagtaccggtcaaagttctggaagttgat
cgccagggccgtgttcgtctgagcattaaagaagcaactgagcagtctcagcctgcaggc
gaaccggaagctccggtaagccagggcgagtaa
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