Citrobacter sp. TSA-1: HF677_002595
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Entry
HF677_002595 CDS
T09275
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF677_002595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cib03019
]
HF677_002595
03009 Ribosome biogenesis [BR:
cib03009
]
HF677_002595
Enzymes [BR:
cib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF677_002595
Messenger RNA biogenesis [BR:
cib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF677_002595
Ribosome biogenesis [BR:
cib03009
]
Prokaryotic type
rRNA helicases
HF677_002595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKE18613
LinkDB
All DBs
Position
539566..541497
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AA seq
643 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNADLLGKRRLEKFAAKVQQQLESSDLDQYRALLAKMQPEEELDIET
LAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDRNDRGGEDRPRR
ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMP
GDVLQHFTRTRILNKPMNMQLVGDAVPHTGGERRSGGRFSGERREGGRGEGRGFSGERRE
GGRSEGRRFSGERREGNRGPRRDDSSAPRRDDSAGRRRFGGDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggccgcgatgttctgggtatggcccagacgggtagcggcaaaactgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcaccgacccgcgaactggcggttcaggttgcagaagccatgacggatttctctaaacac
atgcgcggcgtgaacgtggttgccctgtacggcggccaacgttatgacgtgcaattacgt
gccctgcgtcagggaccacagatcgttgtcggtacgccgggccgtctgctggaccacctg
aagcgcggtactctggacctctccaaactgagcggtctggtactggacgaagctgatgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgctctgttctccgcgactatgccggaagcgattcgtcgtattacccgccgc
tttatgaaagagccgcaggaagtacgcattcagtccagcgtaactacccgtcctgacatc
agccagagctactggaccgtctggggcatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcagaagactttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaa
gtggcagaagcgctggagcgtagcggttatagcagcgctgcactgaacggcgacatgaac
cagtccctgcgtgagcagactctggagcgtctgaaagatggccgtctggatattctgatt
gctaccgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactac
gacatcccgatggattccgaatcttacgttcaccgtatcggccgtaccggtcgtgcgggc
cgtgcgggtcgtgcgctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacatc
gaacgcaccatgaagctgactattccggaagtagaactgccgaacgcagacctgctgggc
aaacgccgtctggaaaaattcgccgctaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgctctgctggcgaaaatgcagccggaagaagaactggatatcgaaacg
ctggcagccgcactgctgaaaatggctcagggcgaacgtccgctgatcctgccgccagat
gcgccgatgcgtccgaaacgcgaattccgcgaccgtgacgatcgtggtccgcgtgaccgc
aacgatcgtggcccgcgtggtgaccgtaatgaccgtggtggtgaagaccgtccgcgtcgt
gaacgtcgtgacgttggcgatatgcagctgtaccgcattgaagtgggccgtgatgacggt
gttgaagtccgtcatatcgttggtgcgattgctaacgaaggcgatatcagcagccgttac
atcggtaacatcaagctgtttgcttcccactcaaccatcgagctgccgaaaggtatgccg
ggcgacgtgctgcagcactttacccgtactcgcatcctgaacaagccgatgaacatgcag
ctggttggcgatgcagttccgcacaccggtggtgagcgtcgtagcggtggccgtttcagc
ggtgagcgtcgtgaaggcggtcgtggagaaggtcgtggtttcagcggcgagcgtcgtgaa
ggcggtcgtagcgaaggtcgtcgtttcagcggcgaacgtcgtgaaggcaaccgcggtccg
cgtcgtgacgattcttctgctccgcgtcgtgatgattccgctggtcgtcgtcgtttcggc
ggtgatgcgtaa
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