Citrobacter sp. TSA-1: HF677_004175
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Entry
HF677_004175 CDS
T09275
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03410
Base excision repair
cib03430
Mismatch repair
cib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HF677_004175 (recJ)
03430 Mismatch repair
HF677_004175 (recJ)
03440 Homologous recombination
HF677_004175 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_004175 (recJ)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HF677_004175 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HF677_004175 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF677_004175 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
PEP-utilizers
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
QKE18910
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All DBs
Position
869059..870792
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AA seq
577 aa
AA seq
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MKQQIQLRRREADETAELPADLPPLLRRLYASRGVRSAQELERSVKGMLPWQHLNGVEKA
VEILYNAFREGTRIIVVGDFDADGATSTALSILAMRALGCSNVDYLVPNRFEDGYGLSPE
VVDQAHARGAQLIVTVDNGISSHAGVEHARTLGIPVVVTDHHLPGDTLPGAEAIINPNLH
DCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERGIAPPNLADLLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPLKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSSDTLPGGLAM
YHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLHP
GMILKFGGHAMAAGLSLEEAQFERFQQRFGELVTEWLDPALLQGEVVSDGALSAAEMTME
VAQMLRDAGPWGQMFPEPLFDGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTT
CWPDNGVREVQLAYKLDINEFRGNRSLQIIIDNIWPL
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaacttcgtcggcgtgaagccgacgagaccgccgagctacctgcc
gacttgccgccattgctgcgccgtttatacgccagccgcggcgtgcgcagcgcgcaggag
cttgagcgtagtgtgaaaggcatgctgccgtggcagcatttgaacggtgtcgaaaaagcg
gttgaaatcctctataacgcttttcgcgaaggaacccgaatcatcgtggtcggcgatttt
gacgccgatggcgcgaccagcaccgcgctcagcattctggcgatgcgcgcgttgggctgc
agtaacgtggactacctggtgcctaatcgttttgaagacggttatggcttaagcccggaa
gtcgttgatcaggcccatgcccggggcgctcagttgattgtcaccgtcgacaacggcatc
tcgtcacacgcgggtgttgaacatgccagaacgctggggatcccggtcgttgtgaccgat
caccatctgcctggggacacgctgccgggtgctgaagcgatcatcaatcctaacctgcac
gattgtgaattcccgtctaaatcgctggctggcgttggcgtggccttctatctgatgctg
gcgctgcgcaccttcctgcgtgacaaaggctggtttgatgaacgaggaattgcgccgccg
aacctggcggatttgctcgatctggttgcgcttggcacggtggccgacgtggtcccgctg
gatgccaataaccgcattctgacgtggcaaggcttaagccgtattcgtgccggaaagtgc
cgtcctggtataaaagcgctgctggagatctccaatcgcgacccactcaaattggctgcc
agtgatttaggttttgccctcgggccacggctgaatgcagcggggcgtctggacgatatg
tccgttggtgtggcgctgttgctgtgcgacaacattggtgaagcacgcgtgctggccaat
gagctggacgcactcaaccagacgcgtaaagagatcgagcagggtatgcaggcggaagcg
ctgactctgtgtgaaaagctggaacgcagtagcgatacgctaccgggcggtctggcgatg
taccatcccgagtggcatcaaggagtggtggggattctggcatcgcgtattaaagagcgc
tttcaccgtccggtaattgcgtttgccccggccggtgacggtacgctgaaaggctccggg
cgctcgattcaggggctgcacatgcgcgatgcgctggagcgcctggacactcttcatcca
ggtatgatcctcaagtttggcggtcacgctatggcggcggggttgtcgctggaagaggcg
cagtttgagcgtttccagcagcgtttcggtgaactggtaaccgagtggctggaccccgcc
ttactgcagggcgaagtggtgtcagacggtgctctgagcgcggcggagatgaccatggag
gtcgcgcaaatgctgcgtgatgccggaccgtggggacaaatgttcccggaaccgctgttt
gacgggcatttccgtctgctccagcagcgtctggtcggtgagcgtcatctgaaggtgatg
gtggagcccgtcggtggtggaccgttgctggacggtattgcgtttaacgttgataccacc
tgctggccggataacggtgttcgcgaagttcagcttgcctacaaactggatattaatgag
tttcgcggcaaccgcagcctgcagattataatcgataatatctggccactttag
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