Citrobacter sp. TSA-1: HF677_004680
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Entry
HF677_004680 CDS
T09275
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cib03009
]
HF677_004680 (rlmD)
Enzymes [BR:
cib01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HF677_004680 (rlmD)
Ribosome biogenesis [BR:
cib03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HF677_004680 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
Methyltransf_11
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_23
FtsJ
Methyltransf_4
Methyltransf_12
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_15
TPMT
Methyltrans_SAM
PrmA
CMAS
Motif
Other DBs
NCBI-ProteinID:
QKE19006
LinkDB
All DBs
Position
989234..990532
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPELLPQESAEVVITEDKKQ
FARAQVKRRLNDSPQREVPRCPHFGVCGGCQQQHASISLQQRSKSAALSRLMKCEVSDVI
ADTPWGYRRRARLSLNYRPKEQKLQMGFRKSASSDIIDVKQCPILVPQLEALLPHIRACL
ESLQGLRHLGHVELVQAGSGTLMILRHTAPLSVQDKEKLECFSHSQGLSLFLAPQSEILE
SISEESPWYDSNGLRLTFSPRDFIQVNEGVNQQMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATRAANVVGVEGVPALVEKGRENALNNGLHNVTFFHENLEEDVTRQPWAKNGFDKV
LLDPARAGAAGVMQHIIKLEPIRVVYVSCNPATLARDSDALLNAGYAIRRLAMLDMFPHT
GHLESMVLFERM
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcgtgacgacgcgtcagatcataaccgttacc
gtcaatgaccttgatcctttcggccagggcgttgctcgccataacggaaaggcgttgttt
ataccggaattgctacctcaggaaagcgccgaggtggtgattaccgaagataaaaaacag
ttcgcccgcgcgcaagtaaaacgacgtttaaacgacagtccgcagcgtgaagtgccacgt
tgcccgcattttggcgtgtgcggcggctgccagcagcagcatgccagcatctcgttgcag
cagcgtagcaaaagcgcggcgttgtcgcgtttaatgaaatgtgaagtgtcggatgttata
gctgataccccgtggggctatcgtcgtcgcgccaggttgagcctgaactatcggccaaaa
gaacaaaaattgcagatggggtttcgcaaatccgcatccagcgacattatcgatgttaaa
caatgccctattttggtgccccagcttgaagcgctcttgccccacatccgggcgtgtctg
gaaagtctgcaagggttacgccatcttggtcatgtcgagctggtgcaggcggggagcgga
accctgatgattttgcgccacacggcgccattaagtgttcaggataaagaaaaactggaa
tgcttttcgcattctcaggggctgtctttgtttctggccccgcaaagcgagatactggaa
tcaatatcagaagagtcgccctggtatgactcaaatggactacggttaaccttcagcccg
cgtgattttattcaggtcaatgaaggggtaaaccaacaaatggtggcccgtgcgctcgaa
tggcttgatgtgcaacctgaagatcgcgtactcgatctgttctgtggaatgggtaatttt
accctgccgttggcaacccgggctgcaaacgtggtgggggtggaaggggtaccggcgctg
gtggaaaaaggccgggaaaacgcgctgaataacggattacacaatgtgacattctttcat
gaaaaccttgaggaagatgttacccggcagccgtgggcgaaaaacggattcgacaaagta
ttgctcgatcctgcgcgtgcgggggctgcaggtgtgatgcaacatattataaaattagaa
cctatacgcgttgtttatgtatcctgtaacccggcaacgctggctcgtgacagcgacgct
ttgctcaacgcgggatatgccatacggcgactggcgatgcttgatatgttcccgcacact
ggacacctggaatcaatggtcctgtttgagcgtatgtaa
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