Citrobacter sp. TSA-1: HF677_010990
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Entry
HF677_010990 CDS
T09275
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cib03032
]
HF677_010990 (topA)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_010990 (topA)
Enzymes [BR:
cib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HF677_010990 (topA)
DNA replication proteins [BR:
cib03032
]
Prokaryotic type
DNA Topoisomerases
HF677_010990 (topA)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HF677_010990 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
CK_II_beta
Toprim_4
DUF4795
Motif
Other DBs
NCBI-ProteinID:
QKE20164
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Position
2295777..2298374
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AA seq
865 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPGGDALPLEVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRDYISDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLIELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaatcgtatgggtgttgacccgtggcacaactgggat
gcgcgctatgaagtgctgcccgggaaagaaaaagttgtttctgaactgaagcaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcg
tggcacctgcgggaagtgatcggcggcgacgacacccgctacagtcgcgtggtgtttaac
gaaattaccaaaaacgctattcgtcaggcgtttgaaaagccgggcgagctgaacatcgac
cgcgtcaatgcgcaacaggcgcgccgctttatggaccgtgttgtgggctatatggtgtcg
ccgctgctgtggaaaaaaattgcgcgaggcctgtcagcaggccgcgtacagtcggttgcc
gtgcgtctggtggttgagcgtgaacgcgaaatcaaagcattcgttcctgaagagttctgg
gaaattgatgctaacacgacgacgccaggcggtgacgcgttaccgcttgaggtgacgcat
cagaatgataaaccgttccgtccggtcaaccgggaacaaacgcttgccgccgttagcctg
ttggaaaaagcgcgctacagcgttctggaacgcgaagataagccgaccagcagcaagccg
ggtgcgccgttcatcacctccacgctacagcaggccgccagcacgcgtctgggcttcgga
gtgaagaaaaccatgatgatggcgcagcgcttgtatgaagcgggctacatcacttatatg
cgtactgactcaaccaacctgagccaggatgcggtgaacatggttcgcgattacatcagc
gataatttcggcaaaaagtatctgccggagagcgcgaaccagtacgccagcaaagagaac
tcgcaggaagcgcacgaagctatccgtccttccgatgtcgccgttcaggcggaatcgctg
aaagatatggaagccgatgcgcaaaaactgtatcagctgatctggcgccagtttgttgcc
tgtcagatgacgcctgctaaatatgattccaccacgctgacggtgggcgcgggtgatttc
cgtctgaaggcgcgtggtcgtattctgcgcttcgatggctggacgaaagtgatgcctgcg
ctgcgtaagggcgatgaagaccgcattttaccagcggtggataaaggcgatacgttgacg
ctcatcgaactgacacctgcgcaacactttaccaaaccgcctgcgcgcttcagtgaagct
tcgctggtgaaagagcttgaaaaacgtgggattggtcgcccatccacatatgcgtcgatc
atttctacgattcaggatcgcggttatgttcgcgttgagaaccgtcgcttctacgctgaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaactgatgaactac
gactttaccgcgcagatggaagacagtctcgaccaggtggcaaatcacgaagccgaatgg
aagggcgtactcgacaacttcttcactgattttactcagcaactggataaagccgagaaa
gatcctgaagagggcggtatgcgtccgaaccagatggtgctgaccagcattgattgccca
acctgcggacgtaagatgggtattcgtaccgccagcaccggcgttttcctgggttgttct
ggctatgcgctttccccgaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgacgatgcggaaaccaacgctttgcgcgccaaacgt
cgctgccagaagtgcggcacggcgatggacagctaccttatcgatcctaagcgcaagctg
catgtatgtggtaataaccctacctgcgacggctatgagatcgaagaaggcgaattccgc
atcaagggttatgacggtcctattgttgagtgcgagaaatgtggctctgaaatgcacctg
aaaatgggacgtttcggcaagtacatggcgtgtaccaacgacgagtgcaaaaatacccgt
aagatcctgcgtaacggtgaagttgctccaccgaaagaggatccggttccgttgccggaa
ctgccgtgtgaaaaatctgatgcgtatttcgtgttacgtgatggcgctgcagggatcttc
ctggcggcaaatacgttcccgaaatcacgtgagacacgtgcgccgctggttgaagagttg
taccgcttccgcgatcgtctgccggaaaaactgcgctatctggcagatgcgccgcagact
gacccggacggcaacaagtcgatggttcgtttcagccgtaaaaccaagcagcaatacgtt
gctgcggagaaagacggtaaggcgaccggctggtccgcgttcttcgttgacggtaaatgg
gtagaagggaagaaataa
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