Citrobacter sp. TSA-1: HF677_017095
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Entry
HF677_017095 CDS
T09275
Name
(GenBank) autotransporter outer membrane beta-barrel domain-containing protein
Organism
cib
Citrobacter sp. TSA-1
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PATR
AC_1
ESPR
Motif
Other DBs
NCBI-ProteinID:
QKE21291
LinkDB
All DBs
Position
3548433..3557765
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AA seq
3110 aa
AA seq
DB search
MNKVYSIIWNAALGIWVVVSELTKGKKKSSSRKTVAVLAAGALSAASMQASATPIIDIGG
HNIFADYQTGISVGDYEGVHDYGFLYEDITAGEALNISGAIPTISPGQSGVVESTTIREL
LQTGKITLQATSPAQGVKTITTAEELAEYLTYNQSSTPSQSTEFEINDPAFPGEKTTIKV
FDTNALSNFLTESQIGDSALNTYDPTQSKIYKQFGIALATNGSTANLNIGDDTLNVRAKA
NTIELLAKDSSLLEAQDAGSQVYWQSDNFIKFNAAPVIPEKTFAGSAQTSVFGDDVTLMT
YGYDTDGKVVETGERTFNITNTQELAEFNDWLLGNSSDAAENPEGEKVSQIQLWLEANEV
TTVTAAQTKYAELIDGLINSSKPSDVLSWDYDVWTDGLSHANNATADRGELHAIYANGAG
TSGTLNKDAILAVDGSINGVMKAVDSGVITNFGELNALRTSTGQSLAIGMLAKDATATNN
GMINSGLFIDKDGNQNVNSYGAFGMQGQGTSQIANNGIINQAITTDNFGTASAADPWSKN
VPASSLTLAIGMQLSDDAQGVNNGDINVVDGRKSGTSFASGTAYGVEVAGNATFTNAQNA
SIYLGRDASDPAKDVTMAGGSSLSAGIMIKSTKEVINNGLITLGTGVRNAAGILVGNATG
NVLNTGNIVINGGSKGGSSKNYGISVHDSGAENNQEIRNDGKINVNGTNNVGIHVSANNK
NAEVTTSAAGAIVVDGEGGVGNRNYAIWAEGDANGQAVVNVYSNITLDKAGNIGVHVRDN
AIANVDSLSSPSFNSTDQIGYYLYGKGATANIGQAVMNDNGQDRTTIFRIANGALLAGNT
TNPKDQSTSNLDLTLSGNNSVGVLATGAGSNVDTGEATFTVKGTDSAALVIEGGAKGTIS
DKTTINLTGERTVAGVVDGQAHQLNGNAQGNATSTTLTSNAKITSEASGNKVIAYVARNL
GNLILDTKSIIDLASVDSIGVDVQKGGSLTNNSSLALHVSNGIGVRASGSSAQINKLGKI
QVDDGTAGVLLTQGASLLINGMTGDSITTDGSADGIRLAEGAGALAAQSVMIRAEGTGAG
IQNDANNTNITLRDVTIDSNDGPGIRTSVALTMNDGLNNILNVNGKGTGFAFEQRNGDAV
TGNLTIGKGYTIEVLNSEGSGIRANTDGRITTNADINVHDSAGGSAIIAKNVSALTNSGK
IISASTTSPVIDASGDSSKAITNTGTLQAINDSAVAVQSGKGNDTIDISGGVTSGVINTG
EGTDTFNWRSGSYAGEVNFAGTGGNNKANIGNVTLDKTRHILTAAGTGNALTFTDTKGAK
IGTLASDNLNTGTNIGTGWDSLTISGSNADVRIVENLNLASETLAVNNGATLRTGDHVEP
TSTAASIGDYNVTTQGADSKVIFDTQGDTSAAQIYRGIISGDGKFERAAGGTTVFTANNS
YTGSTTIDQTGTLQLGDGGNEGEVSAVSDIIDNGVLAINRANTVLLNGVISGIGALQQIG
GGITRLNGNNTYTGNTTVTNGTLLVNGDQSAARGVTTVSGTSTLGGKGIIGGNVLMNDAT
TISAGDGGAGTLSVNGNLQLGSKTTSAFELGQAFTPGGALNDLVNVAGDLQLDGTLDVTT
SQGGNFGPGVYRIYNYGGTLDNQTLELGAIPDSQDKSNIFVQTSIDKQVNLVNANGVTLQ
FWDGATVSQSHGASGIEGDSKIDGGDGKWMAIGSQGDNNWTTATGEGNAPWAQKSFAVFT
TKGGTVTVDNAAGEVNFSGAQFDADGYVVKGDALNAYATTENATHAGQTPGTGELLLRVG
AGGAGQNYTATIESVIREASTTDKLTLVKTDLGRLILSGDNAYRGGTRIDGGTLQISADS
NLGQSGTDLAINNGSTLQMGADLTSNRTIALGANDNAAVFDLNSHNFTPTGEITGDGKLK
VTSSSSDAGSTLSLNRANSYKGDTEIAGTGNANNVTVNVSKTGAFGSNENSTVNVNNGAT
LNVSGTETSLKSLTMNIADSLLTLADNVTAASAKLNLTGTAKALLTDNATAGEATVNVSK
DSTLALEENASGGSASVNNSGLMTFADQALAENTVVKNLAGGKVDISAVDSATSIGSLSG
AGNVELGNKELSLGNLHLDDTISGIISGNDGSLVKIGDGTLTLTGDNTWTGTTDVNEGVL
LVNGNQSAATGQVTVKSGATLGGNGIIGGAVDVLDDGHITAGAAINSVGKLTTGSLTLSD
NAQLDYQFGQAYTPGGAFNDLIDVNGDLTLDGKLNIQTSPGGSFDVGVYRVINYTGTLTN
NVMDIADAPEAADSLYVQTSVKNQVNLVNHAGLTLRFWDGTGGENGELKNNGVINGGDGI
WQSSQGNDNWTTDESTPEGALNAPFTDAAFAVFQGEAGNVTVDNSKGDVIISGAQFATDG
YRVGGEAITTDTANTLIRVGDGTVDGANYTATIDSVIRGTGGLNKGDLGTLILTGDNTYS
GGTTITSGTLQVAGDTNLGAPETGIIFNGGTLKYGEAFDTARQVTLESGGGTFDTNGHNV
SLLTEVEGNGQLTKTGKGSLTLTLDNTYTGGTTIEQGVLQLGNGGDIGSIQGDIVDNGVL
NVNRGDTLALTGNISGEGQLHQTGSGVTELHGENSYSGATLIANGVLQAGNTNTLSSASH
HYVVADTTLNTQGYNQTVAGLSNGGDVSLIGQQTGTTLTVKGDYTGEKGTINMAATQNGS
GAGIADRLIIDGGKASGSTLLDVDGSGLGAPTIGDGIEVVTALNGATTTAQTSRDAFHLA
ADRMAAGAFEYQLHAGNAQGQGENWYLRSEYRPETMLYSGLASVVRQGDISLLGNMHQRM
GDEVKPGIDEDNRAWARMIGYSGKTKLDDAAGTQTSSHTMGIQVGVDMYANESWKAGMYT
SILDIDSNVKGTKTGSDGKGGNIDDNAFYVGGYATWFSGDGMYVDNVLQYGNHKSRLAAT
GNNGSYTVRGNTLTASTEVGKSFRLGASAWSLEPQAQLIYQYSDFDNGRLDGVTQTKVKM
DTADSFTARLGVRLVADYDTNHGKFQPYGRVNVWQGLGSKDKTHFSNAVATTTLESSQQY
SSTEIAAGLSWSIDRNLQVYGELGTQFSNGGSKSQVEAPVNASIGFKKSF
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagtttacagcattatttggaacgcggcgctcggtatctgggtggtcgtttcc
gaattaaccaaaggaaagaaaaaaagcagctcacgtaaaactgtcgccgtactggcggcc
ggcgcattaagcgctgcttcaatgcaagcttcagcaactccgattatcgatatcggtgga
cataatatcttcgccgactaccagacaggtatttctgttggggattatgagggtgtccac
gactacggatttttatatgaagatatcactgctggtgaggcactcaatatcagcggcgcg
atcccaaccatcagtccgggtcaaagtggcgttgttgaatcaacgaccatcagagagcta
ctgcaaaccggcaaaatcaccctgcaggccaccagccctgcccagggcgtaaaaacgatt
actactgccgaggaactggcggaatacctgacttataaccaatcatcaacgccttcgcag
agcacagaatttgagattaacgacccggcgttccccggcgaaaaaacaactattaaagtc
tttgataccaatgcgttaagtaactttcttaccgaatcacagattggcgattcggcatta
aacacttacgatccgacgcagtctaaaatctacaaacaatttggcatcgcgctggcgaca
aacggctccacggccaatctgaatattggcgacgacacgctcaatgtacgcgccaaagcc
aataccatcgaattactggccaaagactcctccttactggaggctcaggacgcgggtagc
caggtttactggcaatccgataactttataaaatttaacgccgccccggttattcctgaa
aaaaccttcgccggctcagcgcaaacctccgtgtttggcgatgatgtcacgctcatgacc
tacggctatgatacggacggcaaagtcgtcgaaacgggtgagcgcacatttaacatcacc
aacacgcaggagttggccgaatttaacgactggctgttgggcaatagcagcgacgcggcg
gaaaacccggaaggcgaaaaagtcagccaaatccaactgtggctggaagcgaatgaagtc
actaccgtcaccgcagcacaaacgaagtatgccgagctgattgatggtctgatcaattcc
agcaagccctcagacgtgctcagttgggattacgacgtctggacagacggcttatcgcat
gccaataacgcgaccgctgaccgcggtgagctgcatgctatttacgccaacggcgcaggc
acctccggcaccctgaacaaagatgcgattcttgccgttgacggcagtattaatggcgtc
atgaaagccgttgatagcggggttatcacaaactttggcgaactgaacgcattacgaacg
tctaccgggcagagcctggcgattggcatgctggcaaaagacgcgacggcaaccaacaac
gggatgatcaactccgggctgtttatcgataaagacggcaaccaaaacgtcaacagctat
ggcgcatttggtatgcaaggtcaaggcaccagccagatcgctaacaacggcatcatcaac
caggcgatcaccaccgataactttggtaccgcttcggcagccgatccctggagcaaaaac
gtccccgcttcttcgctgacgctggcgattggtatgcaattgtctgacgatgcacaaggg
gtcaacaacggcgatattaacgtcgtagacggacgtaaaagcggtacatcctttgccagc
ggcaccgcttatggcgtagaagtcgccgggaatgccacctttaccaacgctcagaatgcc
tctatttatcttggtcgcgacgcaagcgatccggctaaagatgtcaccatggcaggcggt
tccagcctgagcgccggtattatgatcaagagcaccaaagaggtgattaacaacggcctt
atcacgctgggaaccggcgtccgtaacgccgcggggattttggtcggaaatgccacgggc
aacgtcctcaataccggcaatatcgtgatcaatggcggttctaaagggggcagcagtaaa
aactacggcatctccgtacacgacagcggcgcagaaaataatcaggaaatccgtaacgac
ggcaagattaacgtgaatggcaccaacaacgtagggatccacgttagcgccaataacaaa
aatgccgaagtcaccaccagcgctgcaggcgctatcgtggtggacggtgaaggcggcgtc
ggtaaccgtaactacgccatctgggcggaaggtgacgccaacggtcaggcagtggttaac
gtctattccaatattacgctggataaagccggtaacatcggcgtccacgtgcgtgataac
gccatcgctaacgttgacagcttaagtagcccctcatttaacagcaccgatcagattggt
tattacctgtatggtaagggcgcgaccgccaatattggtcaggctgtgatgaatgacaac
ggtcaggatcgcaccaccattttccgtatcgccaatggcgcattgctggccggtaatacc
actaacccgaaagatcagtccacctccaacctggatttgactctcagcggtaacaattcc
gtgggcgtactcgccaccggcgcaggcagtaacgtagataccggtgaagcaacgttcacc
gttaagggtactgactctgcggcgctggttatcgaaggcggcgcgaaagggaccatcagc
gataaaaccaccatcaatttaaccggtgaaagaaccgttgccggagttgtggatggtcag
gcgcatcagttgaatggtaatgcgcagggcaatgccacgagcacgaccctgacctcaaac
gcgaagatcacctctgaagccagcggcaacaaggtaatcgcctatgtggcgaggaatctg
ggcaacctgatccttgataccaaatcgattatcgatctggccagcgtcgacagcatcggt
gtcgatgttcaaaaaggcggtagcttaaccaataactcctccctcgccctgcatgtcagc
aacggcatcggcgtacgcgcctcaggctccagcgcgcagattaataagctgggcaaaatt
caggttgatgatggcaccgctggcgttctgttgacccaaggggcaagcctgctgattaac
ggtatgactggcgacagcattaccaccgatggctccgctgacggtattcgcctggccgaa
ggcgctggcgctctggccgcgcaaagcgtgatgatccgcgctgagggtaccggtgccggt
attcaaaacgatgccaacaacaccaatatcacgctgcgtgatgtcaccatcgactccaac
gatggcccagggatccgcaccagcgtggcgctgaccatgaacgatgggctgaacaatatc
ctcaacgtcaacggtaaaggtaccggcttcgcctttgaacaacgtaatggcgacgcggtg
acgggtaatctaaccatcggcaaaggctataccattgaggtactcaacagcgaaggcagc
ggtatccgagccaatacggacggtcgtatcaccaccaatgccgacatcaacgtgcatgac
agcgcaggtggttcagcaatcatcgcgaaaaacgttagcgcattgaccaacagcggcaag
attatctctgccagtaccacctcaccggtaatagacgccagcggcgacagcagtaaagcc
atcaccaacacgggaaccctgcaggcaatcaacgactcggccgtggcagttcagtctggt
aaaggcaatgacaccatcgatatcagcggcggtgtgaccagcggcgtaatcaacaccggt
gaaggtacggataccttcaactggcgtagcggctcttatgctggcgaagtgaatttcgcg
ggtactggcggtaacaataaagccaacattggcaatgtgacgctggataaaacgcgccac
atccttaccgcagcgggaacgggcaacgccctcaccttcactgatacaaaaggtgcgaag
attggtacgctggctagcgacaacctgaataccggtaccaacattggcactggctgggat
tcactgaccatcagcgggtcaaatgcagatgtacgcatcgttgaaaacctgaatctggcg
agcgaaacccttgctgtaaacaatggcgccacgctgcgtaccggcgaccacgtcgaacca
accagcactgccgcaagcattggcgattacaatgtcaccacccagggcgcagacagcaag
gttatcttcgatactcagggggatacctcagcagcacagatctatcgcgggatcatcagc
ggcgacgggaaatttgaacgtgcggcgggcggcaccacggtgtttaccgccaacaatagc
tacaccggctctaccaccattgatcaaaccggtacgctgcagttaggtgacggtggaaat
gaaggcgaagtgagcgccgtctctgacatcatcgacaacggcgtattggcgattaatcgc
gccaacaccgtgctgctcaacggtgtgatctccggtatcggcgcgctacagcaaatcggc
ggcggcattacccgtctgaacggtaacaatacctataccggtaacaccaccgttaccaac
ggcacgttgctggtgaatggcgatcaaagcgcggcgcgcggcgtcaccaccgtcagcggc
acgtccacactgggcggtaagggcattatcggcggtaacgtgctgatgaacgatgccaca
accatcagcgccggtgacggcggtgcgggtacgctatctgttaacggtaatctgcagctt
ggcagcaaaacgacctccgctttcgaactgggccaggcctttacgccaggcggtgcgcta
aacgatctggtgaacgtggcaggcgatctgcaactggacgggaccctggatgttaccact
tcgcaaggcggtaacttcggaccgggcgtgtaccgtatctataattacggcggtacgctg
gataaccagacgctggagctgggcgcaataccggacagtcaggataagagcaatattttt
gtccagacctctatcgacaaacaggtcaacctggtgaacgccaacggcgttaccctgcag
ttctgggacggggcgacggtaagtcagagccacggcgcgtcgggcattgagggcgacagc
aaaattgacggtggcgatggcaaatggatggcgatcggcagtcagggtgataacaactgg
accacggcaacgggcgaaggtaacgcaccttgggcgcagaagtcctttgccgtcttcacc
accaaaggtggcaccgttaccgtggataacgccgcgggagaagttaacttctccggggca
cagtttgacgccgatggctatgtcgttaaaggcgacgcacttaacgcttatgccaccacg
gaaaacgcgactcacgcaggccagacgccgggaaccggtgaactgctgctgcgcgttggc
gcgggtggcgcggggcaaaactataccgcgaccattgagtccgtcatccgcgaagccagc
acgactgacaagctgacgctggtgaaaaccgaccttggccgtctgatcctcagcggtgat
aacgcgtatcgcggcggcacacgcattgatggcggtacgttgcagatttccgccgacagc
aacctcggtcagagcggaaccgacctggctatcaacaacggctccacgctgcagatgggc
gcggacctgaccagcaatcgcaccattgcgctgggcgcgaatgataacgcggcggtgttt
gacctcaattcacataacttcacgccaaccggtgagattaccggcgacggtaaactgaaa
gtcaccagcagctcaagcgatgcgggcagtactctgtcgctcaatcgcgcgaacagctat
aaaggcgacacagaaattgccggtaccggaaatgccaacaatgtgacggtcaacgtcagc
aaaaccggggcctttggtagcaatgaaaacagcaccgtgaacgtcaataacggggcgacg
ctcaatgtcagcggaacagagaccagcctgaaatccctgaccatgaacatcgccgacagc
ctgttaacactggcggataacgtcaccgccgcgagcgcaaaactgaacctgacgggcaca
gcgaaagcgctgttaaccgataacgccaccgcgggcgaggccacggttaacgtgtcaaaa
gacagtacgttggcgctggaagaaaacgccagcggtggttctgctagcgtgaataacagc
ggactgatgacctttgcggaccaggcgttagcagagaatactgtcgttaaaaacctggca
ggcggtaaggtcgatatcagcgcagtcgacagcgctacatctatcggctcgttgtccggc
gcggggaatgtcgaactgggcaataaagagttgtcgctgggtaatctgcatcttgatgac
accatcagcggcattatcagcggcaacgatggcagcctggtgaaaatcggtgacggcacg
ttaacgctgaccggcgataacacctggaccggcaccacggacgtcaatgaaggcgtactg
ctggtcaacggtaatcagtctgccgcgaccggtcaggtgacggtgaaatctggggcaacg
ctcggcgggaacggtattatcggcggcgcggttgatgtactggatgacggccatattacc
gcgggtgcggccatcaatagcgtgggtaaactgactaccggttcactgacgctcagcgat
aacgcacagcttgattaccagtttggtcaggcctataccccaggcggagccttcaatgac
ctgattgatgtcaatggcgatctgacgctcgacggtaagctcaatatccagacctctcca
ggcggaagctttgacgttggtgtttaccgcgtcatcaactacaccggcacattaaccaac
aatgtgatggacattgccgacgcgccggaagctgcggacagcctgtacgtacaaacctcg
gttaaaaaccaggttaacctggtcaaccatgccgggctgacgctgcgcttctgggacggc
accggcggtgagaatggcgagctgaaaaacaacggcgtcatcaacggcggcgacggtatc
tggcaatccagccagggtaatgacaactggacaacggatgaatcaacgccagaaggcgcg
ctgaatgcaccgtttaccgatgccgcgttcgccgtcttccagggtgaagcgggcaatgta
accgtcgataacagcaaaggcgacgtcatcatcagtggcgcacagttcgccaccgatggt
tatcgcgtgggcggtgaagccattaccaccgatacggctaatacgctgattcgcgtcggc
gatggcacagtagacggcgctaactacaccgcgactatcgacagcgtgatccgcggcacc
ggcggcttgaataaaggcgacctcggtacgctcatcctcactggcgacaatacttacagc
ggtggaaccaccatcacctcaggtacgctgcaggtggcgggtgataccaaccttggcgca
ccagagacgggaattatctttaatggtggtacgctgaaatatggtgaagcgtttgatacc
gctcgtcaggtgactctggaatccggcggcgggacattcgacaccaacggacataacgtt
tctctgctgacggaagtcgaaggtaacggtcagttgaccaaaactggtaaaggctccctc
accctgacgctggataacacctacaccggtggcaccaccatcgagcaaggcgttttacag
ctgggtaacggcggtgatatcggcagcattcagggggatatcgttgataacggcgtactc
aacgtcaatcgtggcgataccctggcgctgaccggtaatatcagcggcgaaggccaactg
catcaaaccggcagcggtgttacggagttgcatggtgaaaacagctacagcggcgcaacg
ctgattgccaacggtgtactgcaggcgggtaataccaacactctgagtagcgcatcacac
cactacgttgtcgctgacactaccctcaacacgcaaggttacaaccagacggtagcggga
ctgagcaacggcggcgatgtttcactcatcggccagcagactggcacaacgttaaccgtc
aaaggggattacaccggcgaaaaagggactatcaacatggcggccacacaaaatggcagc
ggcgcaggcattgccgaccgtctgattatcgatggcggtaaagccagcggtagtacgcta
ttggatgtcgatggttctggtctcggcgcaccaactattggtgatggtatcgaagtggta
accgcgctcaatggcgcaaccactacggcacaaacgtcacgagacgccttccatcttgcc
gccgatcgtatggcagcaggcgcatttgagtatcaactgcatgcgggcaacgctcagggt
cagggtgaaaactggtatctgagaagcgaatatcgtccagaaactatgctgtattctggt
ctcgccagcgtcgttcgtcagggcgacatcagcctgttaggcaacatgcaccagcgtatg
ggggacgaggttaaaccgggtattgatgaagacaatcgcgcctgggcaagaatgattggc
tactccggtaaaaccaaactggatgatgcggctggaacgcaaaccagctcccacaccatg
gggattcaggttggcgtcgatatgtatgccaacgaaagctggaaagccgggatgtatacc
agcattcttgatatcgacagcaacgtgaaaggcacgaagacaggcagcgacggcaaaggc
ggcaacatcgacgacaacgcgttttatgtcggcggctacgccacctggttctcaggcgac
gggatgtatgttgataacgtcctgcaatacggtaaccataaatcccgcctggcggcgacc
ggtaacaacggctcgtataccgtcagaggcaacacgctgacggcgtcaacagaagtgggt
aaatcgttccgtttaggcgccagcgcatggagtctggaacctcaggctcagctgatctat
caatacagcgactttgataacgggcggcttgatggtgtgacccaaacgaaagtgaaaatg
gataccgcggattcctttaccgcccgtctgggcgtgcgtctggtcgctgactatgacacc
aaccatggcaaattccagccttacggcagggtcaacgtctggcagggtctgggttcaaaa
gacaaaacgcactttagcaatgcggtagccaccaccacgcttgagtcttcacaacagtac
tccagcactgaaattgcagccggtctgtcatggtctatcgacagaaacctgcaggtttac
ggagaactgggtacacaatttagcaacggtggcagtaagtcgcaggttgaagcgccggtt
aatgcctcaattggctttaagaaatcgttctaa
DBGET
integrated database retrieval system
