Citrobacter sp. TSA-1: HF677_017985
Help
Entry
HF677_017985 CDS
T09275
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_017985 (sbcC)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HF677_017985 (sbcC)
Archaeal homologous recombinant proteins
HF677_017985 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
ABC_tran
AAA_21
cobW
AAA_15
preATP-grasp_3
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKE21461
LinkDB
All DBs
Position
3745940..3749086
Genome browser
AA seq
1048 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LNTVSQSQNDLMTRDTAECLAEVEFEVRGEAYRAFWSQNRARNQPEGNLQVPRVELARCS
DGKILADKVKDKLEMTAELTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISAMVFEKHKSARTELEKLQAQASGVALLAPEQLQSLTESLQVLTDEEKQYLTSQQ
AQQQHLNWLMRQNELQAEINRHQQALQAALQAQEEAQPQLAALSLALPARALRPHWERIQ
EQTATIDRTRQKIQEVNARLQSSLALRGRIRQQAQTQSAAMLAGQQTLTDWLKEHDRFRL
WSSELAGWKALLAQQSDASAQLRQWQQLRENDTRKLDALAIPTLTLSAQQVTEALAQHVQ
LRPLRQRLSNLHGQIAPKQKQLAQLRATLVQRQQELAQRNAVLTEKRQRYKDKNQQLADV
RIICEQEARIKDLESQRALLQSGMPCPLCGSTTHPAIERYQTLELSVNQTRREALEKEVK
TLADEGSTLRGQLEAITQQLQRDEREVQTLSQEEQALTQEWQTVTASLNVTLQPQDDIAP
WLAAQEEHEQQLHQLSLRHTLQAQITAHTEQITQLQQHIDQRQATLTAELARHGLSLPAE
GEVASWLSERANEAQMWQQRQNELTELQARIAQLAPVLETLPETDALGENIENLSLENWR
QVHDDCLSLQGQWQTLQQQEAQEVQRAAEIQAQFDTALQASIFADRDAFVAALLDEETFN
RLEQLKQSLEGQRQQAQTLLNQAQQALATHQQQLPTGVDLTLTVQHLHDALAQLTQQLRE
NTTRQGEIRQQLKQDGENRQQQQALMLEIAKVAQQVEDWGYLNALIGSKEGDKFRKFAQG
LTLDNLVWLANNQLTRLHGRYLLQRKASEALELEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLDKMFAVDA
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagcctgcgcctgaaaaacctcaactccctgaagggagaatggaaagtc
gattttacggcagaaccgtttgccagcaacgggttgttcgctatcaccgggccaacgggc
gcggggaaaacgaccctgctggacgcaatttgccttgcgctgtaccacgaaacgccgcgc
ctgaataccgtgtcacagtcgcaaaacgacctgatgacccgcgacaccgcggagtgtctg
gccgaggtcgagtttgaggtgcggggcgaagcctaccgcgcattctggagccagaaccgg
gcgcgcaatcagccggagggcaatctgcaggtccctcgcgtagagctggcccgctgctcc
gacggtaaaatcctcgccgataaggtcaaagataagctggagatgaccgccgagcttacc
gggctggattacggacgttttacccgttcgatgctgctgtctcaagggcagtttgccgca
tttcttaatgccaaaccgaaagagcgcgccgagctgctggaagagctgaccggcactgag
atctacggccaaatctccgccatggtatttgaaaagcacaaatcagcgcgtacggaactg
gaaaaactgcaggcccaggccagcggtgttgcgctgttagcgccagagcaattgcaatct
ctgacagaaagtttgcaggtacttactgacgaagaaaaacaataccttaccagccaacaa
gcccagcagcagcacctcaactggctcatgcggcaaaatgagctacaggcggagataaac
cgccaccagcaggcattacaggctgcacttcaggcgcaggaagaggcgcagccgcaactg
gcggcgctgagtctggcactcccggccagagcgttacgcccacactgggagcgaatccag
gaacaaacggctacgattgaccgtacgcgacagaagattcaggaagtgaatgctcgctta
caaagcagcttagcgctgcgcggacgtattcgtcagcaggcacaaacgcagtcggccgct
atgctcgccggacagcaaacgttaaccgactggctgaaagaacatgaccgcttccgcttg
tggagtagcgaactggcaggatggaaagcgctgctggcccaacagtccgacgccagcgcc
caactgcgccagtggcagcagttgcgggagaacgacacgcgcaagctcgatgcgctggcg
attcccacgctgaccctttcggcacaacaggtaacggaagcgctggcgcaacatgtgcag
cttcgtccgttacgccagcggctgagtaatctgcacgggcaaatcgccccgaagcaaaag
caactggcgcagctacgcgccacgcttgtgcagcgtcagcaggagctggcccagcgcaat
gcggtgcttacagaaaagcgtcagcgctataaagataaaaatcagcagcttgccgatgtg
agaatcatttgcgagcaggaagcccggatcaaagatctggaaagccagcgggcactattg
caatccggcatgccttgcccactttgcggctccaccacgcacccggcgattgaacgctat
caaacgctcgaactgagtgtgaatcagacacggcgtgaagcgctggaaaaagaggtcaaa
acgctggccgatgagggttcaacgctacgcggtcaacttgaggcgataacccagcaactt
cagcgcgatgaacgcgaagtacaaacgctttctcaggaagagcaagcacttactcaagag
tggcagacagtcaccgccagcctcaacgtgacgctgcaaccgcaggatgacatcgccccg
tggcttgccgcccaggaagagcacgagcagcagcttcaccagttgagtctgcgtcatacc
ctgcaggcgcaaatcaccgcacacacagagcagattactcagctccagcagcatattgac
cagcgtcaggcaacgttaaccgccgagctggcccgtcatggtctgtcccttccggccgag
ggtgaagtcgcctcatggctgagcgagcgggcgaacgaagcgcaaatgtggcagcagcgc
caaaacgaactgactgaattacaggctcgaatcgcccagcttgcgccggtgctggaaacg
ctgcctgaaaccgatgcgcttggtgaaaacattgagaatctgtcgctggaaaactggcgg
caggtgcacgacgattgtctctctttacaggggcagtggcaaaccttacagcagcaggag
gcgcaggaggttcagcgcgcagcagaaattcaggcgcagtttgataccgcattgcaggcc
agcatctttgccgatcgcgacgcctttgttgccgccctgctggatgaagagacctttaac
cgccttgaacaattgaagcaatcactggaaggccagcgacagcaggcgcaaacgctgctt
aatcaggcgcagcaggcgctggcgactcatcaacaacagctaccaaccggggtggatctc
acgctcaccgtgcaacatcttcacgacgcgctggcgcaactcacccagcagctacgggag
aacaccactcgtcagggcgaaattcgccagcagctcaagcaggatggtgaaaaccgccag
cagcagcaggcgctgatgctcgagattgcgaaagtcgcacagcaggtcgaagactggggc
tatctgaacgcgctgatcggctcgaaagagggagataaattccgcaagtttgcccagggg
ctgacgctggataatctggtctggcttgccaacaaccagttgacccgactgcacggtcgc
tatttgttgcagcgcaaggccagcgaagcgctggagctggaagtggttgatacctggcag
gccgatgccgtgcgtgacacgcgtacgctttccggcggcgagagcttcctcgtgagtctg
gcgctggcgctggcgttgtccgatctggtcagccacaaaacgcgaattgactccctgttc
ctcgacgaaggtttcggcacgttggacagcgaaacgctggataccgccctggatgcgctc
gatgcgctcaacgccactggcaaaactattggtgtcatcagccacgttgaagcgatgaaa
gaacgcattccggtgcagatcaaggtcaaaaaaatcaacggactgggctacagcaaactc
gataaaatgtttgcagttgatgcctga
DBGET
integrated database retrieval system
