Citrobacter sp. TSA-1: HF677_019625
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Entry
HF677_019625 CDS
T09275
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
cib
Citrobacter sp. TSA-1
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cib03021
]
HF677_019625 (rapA)
Transcription machinery [BR:
cib03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
HF677_019625 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Flavi_DEAD
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QKE21774
LinkDB
All DBs
Position
4103725..4106631
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AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFSSTGENRLYARSDSPVTRVMFNPGDT
ITSHEGWQLHVDEVKEENGLLAYIGTRLDTEETGVTLREVLLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFETEQLVICSLDFARRSKQRLEHLCDAEWDLLIVDEAHHLVWSEDAPSREYMAVE
QLAERVPGILLLTATPEQLGLESHFARLRLLDPSRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNNELNMLGDMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPEQIYQEFEGD
TGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFSEEDSGAQVMLCSEIGSEGRNFQFASHLVMFDLPFNPDLLEQRIGRLDRI
GQVHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDTVYNNLIGYLAEPENT
DGFDDLIKTCREQHDALKAQLEQGRDRLLEIHSNGGEKALALAESIEEQDDDTSLIAFAM
NLFDIVGINQDDRGDNLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGEAQVEKSAR
ALIDAARKEADEKLTAELSRLEALRAVNPNIRDDELSAIESNRQLVIESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttggt
actgttgtcgccatggatgcgcgaaccgtcactttacttttctcatcgacgggtgaaaac
cgtctgtatgcgcgcagtgattcccccgtgacccgcgtgatgttcaatcctggtgacacg
atcacgagccatgaaggctggcaactgcatgtcgatgaagtaaaagaagaaaacggcctg
cttgcctatatcggaacccgccttgataccgaagaaaccggtgtaacgctgcgtgaagtg
ctgctcgacagcaaactggttttcagtaaaccccaggatcgcctgtttgccggccagatt
gaccgtatggaccgctttgcgctgcgctatcgcgcacgtaaatttcagagcgaacagtac
cgtatgccgtggagtggtttgcgtggtcaacgtaccagcctgatcccccaccagctcaac
attgcccatgatgtcggccgtcgtcatgcccctcgcgtgttgctggcagacgaagtgggt
ttaggtaaaaccattgaagcagggatgatcctgcatcaacaactgctgtcaggcgccgcg
gagcgcgttctgatcatcgtcccggagacgttacagcaccagtggctggtcgaaatgctg
cgtcgtttcaacctgcgctttgcgctgtttgatgatgagcgttatgcagaagcgcagcac
gatgcctacaacccgtttgaaaccgaacagttggttatctgttcgctggactttgcccgt
cgcagtaaacagcgtctggagcacctgtgtgatgccgaatgggatctgctgattgtcgat
gaagcccatcacctggtgtggagcgaagacgcgcccagccgtgaatatatggccgttgaa
cagctggcagagcgcgtaccaggcatcctgctgctgaccgcaacgccggaacagctgggc
ctggaaagccactttgcgcgcctgcgtctactggatccaagccgcttccacgatttcgcc
cagtttgttgaagaacagaaaaattaccgtccggtcgccgatgccgtcgccatgttactg
gctggcaacaagctgagtaacaatgagctgaacatgttaggtgacatgattggcgaacag
gacattgagccgttattgcaggcggcaaacagcgacagcgaagacgcccagagcgcgcgt
caggagctggtttcgatgctgatggaccgccacggcaccagccgcgtgctgttccgaaat
acccgtaacggtgtgaaaggcttccctaaacgcgagctgcataccatcaaattgccgttg
ccaacccaataccagacggccattaaagtctccggtattatgggcgcgcgtaagagcgcg
gaagaccgcgcgcgcgacatgctctacccggagcagatttatcaggaattcgaaggcgac
accggcacctggtggaactttgacccgcgcgtggaatggctgatgggctacctgaccagc
caccgctcgcaaaaagttctggtcatctgtgcgaaagccaccactgcgcttcagctggag
caggttctgcgcgagcgcgaaggtatccgcgccgccgtgttccatgaagggatgtcgatc
attgaacgtgaccgcgctgcggcctggtttagcgaagaagatagcggcgcccaggtgatg
ctgtgctctgaaatcggctccgaagggcgtaacttccagttcgccagccatctggtgatg
tttgatctgccgttcaatccggacctgctggaacagcgtattggccgtctggaccgtatt
ggtcaggtgcatgatatccagatccacgttccatacctggaaaaaaccgcgcaatccgtg
ctggtgcgttggtaccacgaaggtctggatgcgttcgaacacacttgcccgaccggacgt
accatctatgacacggtatataacaatctgatcggttacctagctgagccagaaaacacc
gatggctttgacgatctgatcaaaacctgtcgcgaacagcatgacgcgctgaaagcacag
ctggagcaaggtcgcgatcgcctgctggagatccactctaacggcggcgaaaaagcgctg
gcgctggctgagagtattgaagaacaggacgacgataccagcctgatcgccttcgccatg
aacctgtttgatatcgttggtattaatcaggatgaccgtggcgacaatttgatcgtgctg
acaccgtccgatcatatgctggtgccggatttccctggcctgccggaagatggctgtacc
attacgtttgagcgtgatgttgccctgtcgcgtgaagacgcgcagtttattacctgggag
catccgctgatccgtaatggtctggatctgatcctctccggcgacaccggaagcagcacc
atttctttgctgaaaaacaaagcattaccagtcggtactctgctggttgaactggtctac
gtcgttgaagcgcaagcgccaaaacagctgcagttaaaccgcttcctgccgccaaccccg
gtacgcatgctgctggacaaaaacggcaacaaccttgccgcgcaggttgaattcgaaacc
tttaaccgtcagctcagcgccgttaaccgccacaccggcagtaaactggtcaacgccgta
cagcaggatgtgcatgccattctgcaactcggtgaagcgcaggtagaaaaatcggcccgc
gcgctgatcgacgcggcgcgtaaagaggcggacgagaagctgacggctgaactctcccgt
ctggaagcgctgcgtgccgttaacccgaacatccgtgatgacgaactcagcgccattgaa
agcaatcgtcagctggtgatcgaaagcctggatcaggcgggatggcgtctggatgccctg
cgcctgatcgtcgtgacgcatcagtaa
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