Citrobacter sp. TSA-1: HF677_022375
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Entry
HF677_022375 CDS
T09275
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF677_022375 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cib03021
]
HF677_022375 (rpoC)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_022375 (rpoC)
Enzymes [BR:
cib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF677_022375 (rpoC)
Transcription machinery [BR:
cib03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF677_022375 (rpoC)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF677_022375 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
QKE22275
LinkDB
All DBs
Position
complement(4710105..4714328)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSEPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcctcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcctctccgaccgctcacatctggttcctgaaatctctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcttatgtggttatcgaaggcggtatgactaacctggaacgtcaacagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagcaatccaggccctgctgaagagcatggatctggagcaagagtgcgaaact
ctgcgcgaagagctgaacgaaaccaactccgaaaccaagcgtaagaagctgaccaaacgt
atcaaactgctggaagcattcgtacagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacatcagatctgaacgatctgtaccgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgtggtcgtgcgatcaccggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atttacggcaagctggaattgcgtggcctggccaccaccatcaaagccgctaagaaaatg
gttgaacgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccactggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtctccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtattgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatctatcgcgcaggt
ctggcctctctgcatgcgcgtgttaaagtgcgtatcactgaatacgaaaaagatgaaaac
ggcgaattcgttgcgcacaccagcctgaaagacacgaccgttggtcgcgccattctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagca
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttc
gctgaccagacaatgtacaccggctttgcttatgcagcgcgttcaggtgcatctgttggt
attgatgacatggtcatcccagagaagaaacacgagatcatctctgaagcggaagctgaa
gttgctgagatccaggagcagttccagtctggtctggtaaccgcgggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggcgtagaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gctggtatgcgtggtctgatggctaagccagatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttatctgacccgtcgtctg
gttgacgttgcgcaggacttggttgttactgaagacgattgcggcacgctggaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagaaccgctgcgcgatcgcgttctg
ggtcgtgtgactgctgaagacgttctgaagccgggcacggcggatattctggttccacgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagagaactccgttgactccgtc
aaggtccgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgttacggt
cgtgacctggcgcgtggccacatcatcaataaaggtgaagcaatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaatgcgaagtcggttgttaactccagcggtaaactggttatcacctcacgtaacacc
gaactgaaactgatcgacgaattcggccgtaccaaagaaagctataaagtgccttacggc
tccgttatggcgaaaggtgatggcgaacaggttgctggcggcgaaaccgtagcgaactgg
gatccgcacaccatgccggttatcaccgaagtgagtggtttcgtccgcttcactgacatg
atcgacggccagaccattactcgtcagaccgacgagctgaccggtctgtcttctctggtg
gttctggattctgcagaacgtactgcgggtggtaaagacctgcgtccggcactgaaaatt
gttgatgctcagggcaacgacgttctgatcccaggcaccgatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtgtaccgcaggaatccggcggtaccaaggatatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaaggtaaacgtcgtctggttatcaccccggta
gacggtagcgagccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgttgtttccgacggtccggaagcgccgcacgacatc
ctgcgtctgcgtggtgtgcatgctgtaactcgttatatcgttaacgaagttcaggacgta
taccgtctgcagggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgaaagcgctggtagctccgacttcctggaaggcgagcaggtt
gaatactcccgcgtcaagattgctaaccgcgatctggaagcgaacggcaaagtgggtgca
acattctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tctgcagcatcgttccaggaaaccacgcgtgtcctgaccgaagccgctgttgcaggtaaa
cgtgatgaactgcgcggtctgaaagagaacgttatcgtgggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgccgccgcgcagcgggcgaactgccagct
gctccgcaggtgactgctgaagatgcgtctgccagcctggcagaactgctgaacgcaggc
cttggcggttctgacaacgattaa
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integrated database retrieval system
