Citrobacter sp. TSA-1: HF677_023060
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Entry
HF677_023060 CDS
T09275
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03030
DNA replication
cib03410
Base excision repair
cib03420
Nucleotide excision repair
cib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF677_023060 (polA)
03410 Base excision repair
HF677_023060 (polA)
03420 Nucleotide excision repair
HF677_023060 (polA)
03440 Homologous recombination
HF677_023060 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cib03032
]
HF677_023060 (polA)
03400 DNA repair and recombination proteins [BR:
cib03400
]
HF677_023060 (polA)
Enzymes [BR:
cib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF677_023060 (polA)
DNA replication proteins [BR:
cib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF677_023060 (polA)
DNA repair and recombination proteins [BR:
cib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HF677_023060 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF677_023060 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH
Prok-E2_E
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QKE22396
LinkDB
All DBs
Position
complement(4861115..4863901)
Genome browser
AA seq
928 aa
AA seq
DB search
MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLILQYQPTHAAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT
LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMASKLEQNK
EVAYLSYQLATIKTDVELELTCEQLEVRQPAADELLDLFKQYEFKRWVTDVEAGKWLQAK
GTKPAAKPQETIAVDETPEGPATVLSYDNYVTILDEATLEEWIAKLKKAPVFAFDTETDS
LDNISANLVGLSFAIEPGVAAYVPVAHDYLDAPDQIARDRALALLKPLLEDENAHKVGQN
LKYDRGILANYGIELRGITFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKG
KNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRV
ERNGVKIDPAVLHKHSEELTLRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLK
KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYH
QAVTATGRLSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD
KGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLNIP
RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAE
RAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKI
HQLMENETQIDVPLLVEVGSGENWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggttcagatcccagaaaacccacttatccttgtagatggctcctcttacctgtatcgc
gcataccatgcgttcccgccgctgactaacagtgcaggagaacctactggcgcgatgtat
ggtgtcctcaacatgctgcgtagcttgattctgcaatatcagccgacccatgctgcggtg
gtattcgacgctaagggtaaaaccttccgtgatgagttattcgaacactacaagtcacac
cgcccacccatgccggacgatctgcgtgcgcagattgagcctctgcatgcgatggtaaaa
gcgatggggttgccactgctggccgtttcgggcgtggaagcagacgatgtcattggtacg
ctggcgcgggaagcagagaaggtgggtcgtccggtgttgattagtaccggtgataaagat
atggctcagttggtgacgccgaatatcaccctgatcaacaccatgaccaatacgatcctc
ggcccggatgaagtggtgaataaatatggtgttccaccagaactgatcatcgatttcctg
gcgctgatgggggattcctcagataacatccctggcgttccaggcgtaggtgaaaaaacc
gcgcaggctctgctgcaggggctgggggggctggataccctctatgctgaatcagacaaa
atcgcggggctgactttccgtggtgcgaaaactatggcgagcaaacttgagcagaataaa
gaggtagcgtacctctcttatcaattagctaccatcaaaacggatgttgaactggagttg
acctgcgagcagttggaagtacgtcagccggcagcggatgaactacttgacctatttaaa
cagtatgaattcaagcgttgggttactgacgttgaagcgggtaaatggctacaggcgaaa
ggaacgaagccggcggcaaaaccacaggaaactatcgccgtcgatgaaacgcctgagggg
ccggccacggttctctcgtatgataactatgtgacaattctggatgaagcgacgctggaa
gagtggattgcgaagctgaaaaaagcgcctgtctttgccttcgatactgaaactgacagc
ctggacaacatctccgcgaatctggttggcctgtcttttgccattgaaccgggtgtggct
gcatatgttcctgttgcccacgattacctggacgcccccgatcagatcgctcgcgaccgc
gcgctggcattgctgaagccgctgctggaagatgagaacgcgcataaagtcgggcaaaac
ctgaagtatgatcgcggtatcctggcgaactatggcatcgaactgcgtggtatcaccttt
gacaccatgctcgaatcctacattcttaacagcgtcgctggccgacacgatatggacagc
ctgtcggaccgctggctgaaacataaaaccatcacctttgaagagatcgccggaaagggc
aaaaaccagctgacctttaaccagatagcgctggaagaagccggacgttatgctgcggaa
gacgctgacgttacgctacagctccatctcaaaatgtggccagaattgcagcagcataaa
ggaccgctgaacgtctttgaaaatatcgatatgccgctggttcctgttttgtctcgcgtt
gagcgcaacggtgtgaaaatcgatccggctgttctgcacaaacattcagaagagctgacg
ctgcgtttgaacgagctggagcaaaaagcgcacgagatcgccggagaagcgtttaacctc
tcttccaccaagcaactgcaaactatcctgtttgaaaagcagggtattaagccgctgaag
aaaacccctggcggcgcgccatcaacgtcggaagaggtactggaagagctcgcgctcgat
tacccattgccgaaagtgatcctggaatatcgcggcttagcaaaactgaagtcgacctat
acggataagcttccgttgatgattaacaagaaaaccgggcgcgttcacacctcctatcac
caggcggtgactgctaccgggcgcttatcatccacggatccaaacctgcagaacatcccg
gtacgtaatgacgaaggtcgtcgtattcgtcaggcgtttattgcgccagaagactacgtg
attgtctccgccgactactcacagattgaactgcgtatcatggcgcatctctcgcgtgat
aaaggtctgcttaccgcgtttgccgaagggaaagatattcaccgcgcaacggcggcggaa
gtcttcggcttaccgctggattccgtgactggtgaacaacgccgcagcgcgaaagccatc
aacttcggtctgatctacgggatgagtgcctttggtttggcgcgccagttgaatattccg
cgtaaagaagcacagaagtacatggacctctacttcgaacgctaccctggcgtgctggaa
tatatggaacgcacccgtgcacaggcaaaagagcaaggttatgtcgaaacgctggaaggg
cgtcgtctctatttaccggatattaaatccagtaatggcgctcgtcgcgctggtgcagag
cgcgcggcaattaacgccccgatgcagggtactgccgcagacattatcaaacgagccatg
attgcggtggacggatggctgcaaaccgagcaaccacgtgtgcgcatgatcatgcaggta
cacgatgaactggtgtttgaagtgcataaagatgacctcgaaagcgtctctaaaaagatc
catcaactgatggaaaacgagacccagattgatgtgccgttgctggtggaagtcggtagt
ggcgaaaactgggatcaggcgcactaa
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