Citrobacter sp. TSA-1: HF677_024340
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Entry
HF677_024340 CDS
T09275
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cib
Citrobacter sp. TSA-1
Pathway
cib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF677_024340 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cib03019
]
HF677_024340 (rhlB)
Enzymes [BR:
cib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF677_024340 (rhlB)
Messenger RNA biogenesis [BR:
cib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF677_024340 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKE22804
LinkDB
All DBs
Position
unnamed2:complement(18068..19336)
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaggtg
atagaagcccttgaaaataaaggctttcataactgcacgcccattcaggccctcgcgctg
ccgctaacgctggcaggtcgtgatgttgcagggcaggcgcaaaccggtaccggaaaaacg
atggcgttcctgacgtcaacgtttcattatcttctctctcatcccgcgattgccgatcgc
aaggtgaaccaaccgcgtgcgttaattatggcgccaacgcgtgagttagccgtgcagatc
catgctgacgccgagccgctggcacagaccaccggtttgaaattaggcctggcttatggc
ggcgacggttacgacaaacagctgaaagtgctggaaagcggcgtcgatattcttatcggc
acgaccggtcgtctcatcgactatgcaaaacagaaccacattaacctgggcgcgattcag
gtcgtggtgctggatgaagccgatcgtatgtacgatctgggctttatcaaagatatccgt
tggctgttccgtcgtatgccgccaaccacccaacgtctgaacatgctgttttctgcaacc
ctctcttaccgcgttcgcgaactggcgttcgaacagatgaataacgccgagtacgttgaa
gtcgaaccggaacagaagacaggtcaccgtattaaagaagagctcttctatccttccaac
gaagagaaaatgcgtttactgcaaacgctgattgaagaagagtggccagatcgcgccatc
gtctttgctaacaccaagcatcgttgtgaagatatctggggtagccttgccgctgacggt
catcgcgtcggtctgttgaccggtgacgtggcgcagaaaaaacgtctgcgtatccttgat
gagttcacccgtggcgatctcgacattctcgttgcgacggatgtcgccgcgcgtggtctg
catatcccagccgtaacgcacgtatttaactatgacctgccggatgactgtgaagattac
gttcaccgtatcggtcgtaccggtcgcgccggagcaagcggtcactctatcagcctggcc
tgtgaagaatacgcgctgaatttaccagcaatcgagacctatatcggtcactcgatcccg
gtcagcaagtacaacccggatgcgctgatgaccgatctgccgaagccgttacgcttaacg
cgtccgcgcacaggcaatggcccacgccgtaccggtggtgctccgcgtaatcgtcgtcgt
tcaggttaa
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