Citrus x clementina (clementine): CICLE_v10000087mg
Help
Entry
CICLE_v10000087mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03008
Ribosome biogenesis in eukaryotes
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CICLE_v10000087mg
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10000087mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10000087mg
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10000087mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10000087mg
03016 Transfer RNA biogenesis [BR:
cic03016
]
CICLE_v10000087mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CICLE_v10000087mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
CICLE_v10000087mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
Pre-60S particles
RNases
CICLE_v10000087mg
Transfer RNA biogenesis [BR:
cic03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
CICLE_v10000087mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
18042431
NCBI-ProteinID:
XP_006435154
UniProt:
V4V8C8
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MGVPAFYRWLAEKYPLVVADVIEEEPVVIDGVKIPVDTSKPNPNGLEYDNLYLDMNGIIH
PCFHPEDRPAPTTFDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
ASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHL
RLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLA
LATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKK
PYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIK
REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSACVGRLDNGKGTSGRP
HKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDKVK
LGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHY
APFASDLKDLDQFNISFELGHPFKPFNQLLGVFPAASSHALPEHYRKLMTDPNSPISDFY
PTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLS
HPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASM
EDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENG
RHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHGSPLPYAAAPYVPPVPSYQE
YGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYD
RNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW
GGANQSMPRGYGQGQHHQRRDGGYQQYHDQQRNYSHLQGNHQQRGNQGQHQPRGNQGQYV
RDNQQRGNYGHHQQNNQQRNNQFTALDRRPKRPPPGGDGH
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttttacagatggctagcggagaagtatccgttagtggtggccgac
gtgatcgaagaagagcccgtcgttatcgacggcgttaagattccggtcgatacaagtaaa
cctaatcctaacggtttggaatacgacaatttgtatctcgacatgaacgggatcattcac
ccctgctttcatcccgaagacagacctgctccaacaacatttgacgaggtatttcaatgt
atgtttgattacattgacagactctttgtgatggtgcgtccccgaaaactgctttacatg
gcaattgatggtgttgctccgcgggctaaaatgaatcaacagcgatctaggcgttttaga
gcctctaaagatgctgctgattcggctgccgaagaagaacgtctacgacaggaatttgag
agagaaggcagaaagcttcctcctaaatctgattcgcaagtttttgattctaatgttatc
actcctggaaccgaatttatggccgttttgtcaatcgcattgcagtactatattcatctt
aggttaaataatgatcctggatgggaaaaaattaaggttatactctctgatgcaaatgtt
cctggtgaaggggaacacaagattatgtcatacgttcgccttcaaagaaatcttcctggt
tatgatccaaatactcgccattgcttgtatggtttggatgcggatctgattatgttggct
ttggcaacgcatgaagttcatttttcaatccttcgagaggttgtatttactcctggacag
caagacaaatgctttctttgtggtcagcctggtcatctggctgccaattgtgaaggaaag
gcgaagagaaaggcaggagaatttgatgaaaaaggggatgaggtcgttgtgcctaaaaag
ccctatcagtttctccacatatggacccttagagaatatctggactacgagttcagaatt
cctaatcctccatttgagatcgacttagaatgcattgtggatgattttatctttatgtgt
ttctttgttggcaatgactttttgccgcatatgccaacattggagattcgtgagggtgca
atcaacttgttgatggcagtttacaagaaggaatttagggctttgggcgggtacttgact
gatggaagcaagccaagtctgcgccgggtggagcattttattcaagctgttggatcttat
gaggatagaatattccagaaaagagcacgactccatcagagacatgctgaaagaatcaag
cgtgaaaaggcacaagcaagaagaggagatgatgtggagcccctagcccaacctgattcc
ttagttcctgtttctcgatttcatggttctcgtcttgcttcaggcccttctccttcacca
tatcagcaaagtgcatgtgttggcaggctagataacggtaaaggaacttccggtcggccc
cataaagttcctcgtttgtcttcaggggccactattggtgcagccattgttgaagcagag
aatagttttgaaacagatccacaggaaaataaggaagaatttaaagcaaagcttaaggag
ttacttcgtgataaatccgatgcgttcaactcagataatcctgaagaagacaaggtcaag
ttgggagagccaggttggaaagaaaggtattatgaagagaagtttaatgctaaaactccc
gaggaacgtgaagaaacaagaaaggacgttgtcttaaggtacacagagggtctgtgttgg
gttatgcattactactatgaaggtgtctgttcttggcagtggttttatccttatcattat
gcaccctttgcttctgatctcaaagatcttgatcagttcaatatcagctttgaattgggg
catcctttcaaaccatttaatcaacttttgggggttttccctgctgcaagttcccatgca
cttcctgagcattataggaaattgatgacagatccaaactctcctataagtgatttttac
ccaactgattttgaagtggacatgaatggaaagaggtactcttggcagggtattgcaaag
ctgcctttcattgatgaagctcgtcttcttgacgaggtcaagaaaattgagcatacttta
accgaggaagaagctcgaaggaacagtatcatggctgatatgctttttgttctcctgtct
catccgctctctgcaagcatatatacacttgatgaacattgtaaacagttgaaaatcaaa
gagcgagttgaagttaaggagcgtctcaatcccgagttaagcgatgggatgaacggttac
atatccccttgtgctggcgatcctcatccccctgtatttagatctcctgtcgcaagcatg
gaagatatcatgggcaaccaagtcttatgtgctatatacaaacttccagatgcacataag
cacgttaccaggcctcctgccggagttatatttccaaaaaagatagtgcaattggaggat
ctgaaacctgcacctgtattgtggcatgaagattctggaaggaggcctcatgaaaatgga
agacataatccccatggaactatttctggccgtcagctcggggaggcagcgcacagacta
gttgctaatagtttacagcacatgaaagtggatcgtaatgggtatggtgatcgtatgcat
ggttcaccgctaccttatgctgcggccccgtatgtccctccagttccttcctatcaagaa
tatggggtttatgatcaaggatataatagattctcgcagccaagaacagatagctatcct
gcagggcattcccaatcgtctatttctgctgcacaacctccctatgatggtgggtatagt
caacactatgcttcaaatacttctcaccatcctaacagaagatatcatcctcagtatgat
agaaattccagtggagagcatccaacgcatttgtacaacccttcaggaattcatcagaat
ggaggaccaaggtatccacccagacctatgggctcgacatcaagtggggctaatttatat
cctccccaaggtggttacagtgggtaccaatcacctgcagctggtagctttaatcagtgg
ggcggtgccaaccagagcatgcctagagggtatggacaaggacaacatcatcaaagaaga
gacgggggctaccaacaataccatgatcagcaaagaaactacagtcatctccaaggaaac
catcaacaaagaggtaaccaggggcagcatcagcccaggggaaaccaaggtcagtacgta
cgggataatcaacagagaggaaactacggtcaccatcaacaaaataatcagcagagaaac
aatcaattcactgcattagacagaaggcctaaaaggccgccaccaggtggggatggccat
taa
DBGET
integrated database retrieval system
