Citrus x clementina (clementine): CICLE_v10000467mg
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Entry
CICLE_v10000467mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10000467mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cic03021
]
CICLE_v10000467mg
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10000467mg
Transcription machinery [BR:
cic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CICLE_v10000467mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CICLE_v10000467mg
U7-dependent histone pre-mRNA processing factors
CICLE_v10000467mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
RMMBL
Lactamase_B_6
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
18040874
NCBI-ProteinID:
XP_006431750
UniProt:
V4T0T7
LinkDB
All DBs
Position
Unknown
AA seq
588 aa
AA seq
DB search
MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCY
TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQP
RNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPL
AKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQS
GLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFS
AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY
FNSEKMAKTIGRLAEKMPEVGETVSGILVKTGFTYQIMAPDDLHIFSQLSTTNITQRITI
PYSGAFGVIKYRLEQIYESVESSTDEESGVPTLRVHDRVTLKQDSEKHISMHWTSDPISD
MVSDSIVALVLNINREVPKVVVESEAIKSEEESGKKAEKVIHALLVSLFGDVKLGDNGKL
VINVDGNVAHLDKQSGDVESENEGLKEKVKAAFKRIQSAVKPIPLAAS
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgactcatgctacaaaggctatttacaagttgcttttgactgattatgtaaaagtgagc
aaagtttcagttgaagatatgttgttcgatgaacaagacattaatcgctccatggataga
attgaggttcttgatttccatcagacagtggaagtgaatggcattaaattctggtgttat
accgctggccatgtcctgggtgctgccatgtttatggttgacattgctggtgttcgagta
ctctacactggagattattctcgtgaagaagaccgacatctccgtgctgctgagcttcct
cagttctctcctgacatttgtataatcgaatccacttatggtgttcagcttcatcaacca
cggaacattcgtgagaggcgcttcactgatgttattcactcaactatttctcaaggaggt
cgtgttctaattccggcatatgcccttggccgagcccaggagctgctgctgatccttgat
gagtactggtcgaaccatccggagttccataatattccaatttattatgcttctccactt
gccaaaaagtgcatggctgtttatcagacatacatcctttccatgaatgagagaatccgc
aaccagtttgcaaactcaaatcccttcaaattcaagcacatttcgccattaaatagcatt
gatgacttaagtgatgttggcccttcagtggtgatggcaagcccgggtgggctacagagt
ggtttgtctagacaattatttgatatttggtgctctgataagaaaaatgcttgtgtcata
ccaggttatcttgttgaaggaacattggcaaaaaccataattagtgaaccaaaagaagtc
acccttatgaatggtctcaccgctcctctcaacatgcaggtccattacatatctttctct
gcacacgcagactatgctcagacaagcacatttttgaaagagctcatgcctcctaacata
attcttgttcatggagaatctcatgagatggggaggctcaaaacaaagctaatgaccgaa
ttagctgactgcaatacaaaaattataaccccaaagaactgtcagtccgttgaaatgtat
tttaactccgagaaaatggcaaaaaccattggaaggctggctgagaaaatgccggaagtt
ggtgaaactgtcagtggcatacttgtaaagacaggtttcacttaccagataatggctcct
gatgatcttcacatcttctcacagctatcaacaacaaatattacccagaggattactatc
ccgtactcaggggcctttggtgtgataaagtaccggcttgagcagatatacgagagtgtg
gagtcttcgacagatgaggaatctggggttcctactctacgagtgcacgatcgagtgact
ttgaagcaggactcagagaagcatatatcgatgcattggacttcagatcctataagtgac
atggtgtcagattctattgtagcattggttctaaacatcaatcgggaggttcctaaggta
gttgtggaatcagaggccataaaatctgaggaagaaagtgggaagaaagcagaaaaggtt
attcatgcactgcttgtctcactctttggagatgtgaaattaggagataacggaaagctg
gtgataaatgttgatgggaatgtggcacatcttgataaacaaagcggagatgtagagagc
gaaaatgaaggcctcaaggaaaaagttaaagcagcatttaagcgaattcaaagtgcagta
aagcctatcccactcgctgcatcttag
DBGET
integrated database retrieval system
