Citrus x clementina (clementine): CICLE_v10000727mg
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Entry
CICLE_v10000727mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10000727mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10000727mg
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10000727mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v10000727mg
Spliceosome [BR:
cic03041
]
Complex A
U1 snRNP components
U1 related factors
CICLE_v10000727mg
Complex B
CICLE_v10000727mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
Pre-60S particles
Helicases
CICLE_v10000727mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
SWI2_SNF2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18040628
NCBI-ProteinID:
XP_006432064
UniProt:
V4V0N7
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MMYEPPHRRTSSSNSIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHE
YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL
APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL
QQGNTSLSRVSFVVLDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQE
YLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF
VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVATDVASRGLDV
MGVAHVVNLDLPKTVEDYVHRIGRTGRGGSMGQATSFYTDRDMLLVAQIKKAIVDAESGN
AVAFATGKVARRKEREAAAAQKGATVATSKLSMMGPSVNIEDKYRFMIAASNMKREGAAD
SAWDD
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatgaaccaccgcaccggagaacctcgagctccaactcaattgaggaggttcgt
ttgcgtcttaacgtggatgttactgttgcttcaggctctgttccagcccctgcacctatt
gaatcttttactgacatgtgtttacacccgagtatcatgaaggatattgagtttcatgaa
tatacgaggccaacttctattcaggctcaggctatgcctgttgctctcagtggaagggat
ctattgggttgtgctgaaactggcagtggcaaaactgcagcattcaccattcctatgatt
cagcactgtgtggctcaaacacctgttggacgtggtgatggacccttggcattggtgttg
gctcctaccagagagcttgcccaacaaatagaaaaagaggttaaagctcttagtcgatct
cttgattccttcaaaactgcaatagtagtgggtggaacaaacattgctgagcagaggtct
gagctacgaggaggagtctccatagtggttgctactcctggaagatttcttgatcatttg
caacaaggaaacacttctctttctagagtttcatttgttgttctagatgaagcagataga
atgcttgatatggggtttgaaccacagataagggaggtaatgcagaatcttccagataaa
catcaaactttgctgtttagtgcgaccatgcctgtggagattgaagctttagcacaggag
tatctaactgatcctgtgcaagttaaggtgggtaaagtgagcagcccaacagcaaatgtt
attcagattttggaaaaggtttctgagaatgaaaaggttgatcggctacttgctttgctt
gtggaggaggcttttcttgctgaaaagtcttgtcatccctttcctttaaccattgttttt
gtggaaaggaagacaaggtgcgatgaggtttctgaagcattggtagcagagggtttacat
gctgttgctcttcacggtggccgtaatcagagtgacagggagtctgctctacgtgatttt
agaaatggctctactaatattttggttgccacagatgttgcatctcgtggtttggatgtc
atgggagttgctcatgttgttaatctggatctgccaaagaccgtggaggattatgtgcac
cggattggaaggaccgggcgtggtggatcaatgggacaagctacttctttttacacagat
cgggatatgctccttgtggcacaaataaagaaagcaatcgtagatgctgaatctggaaat
gctgtggcatttgcaactgggaaggttgccagaaggaaggagagggaagcagcagctgca
cagaaaggagcaacagttgcaacgtccaagctctcgatgatgggaccgtcagtaaacatt
gaagacaagtacaggttcatgattgcagcttcaaacatgaaaagggagggtgcggcagat
agtgcttgggatgactga
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