Citrus x clementina (clementine): CICLE_v10000749mg
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Entry
CICLE_v10000749mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14407
cleavage stimulation factor subunit 2
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10000749mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10000749mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CICLE_v10000749mg
U7-dependent histone pre-mRNA processing factors
CICLE_v10000749mg
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
Motif
Other DBs
NCBI-GeneID:
18041878
NCBI-ProteinID:
XP_006434570
UniProt:
V4T8K1
LinkDB
All DBs
Position
Unknown
AA seq
553 aa
AA seq
DB search
MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGMAAIVDPQKQLGGPAIHGE
SVHHQPIGLHIAITAAAVMTGALGAAQVGVQSNQNGIQSQLASPNDPLTLHLAKMSRNQL
NEIMSEMKLMATQNKEQARQLLVAKPQLLKALFQAQIMLGMATPQVSQMPILRQGPGHPA
QPLFQDGQQQVAQLPGLPPLAQKMQLMPKVQEAQIQLHNQFSAATQPTVHPQIQLPQNAK
NQALQQASLPGQSGIPMLPSMHPSVRPQIQLANSSSLNQQVHPPSLENQVQVSASSLGQN
TWTKLPNSAMRSSFLPHPPSSDAGFQPGPSTSAGIGQTVSRDAERTARVPEDGTRAHRNN
AYTNMSMGLASKRSTVNDPLDSISHPSKIVKTEDGSGTSFSVGALNVSKPIGSAPSQAFG
AGLVPVNQVPKVEEVQYSEKQIPQPQISPDVESALLQQVLSLTPEQLNSLPPEQRQQVIQ
LQQALLRDQMQPS
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttctcagcatcgttgcgttttcgttgggaacattccgtatgatgcaactgag
gaacagcttatagaaatctgcagggaggttggtcctgttgtgtcattcagattagttatt
gatagagaaactggaaaaccaaaaggttatgggttctgtgagtacaaggatgaagagaca
gctctaagtgctcgccgtaatctacaaggttatgagatcaatggccggcaattacgtgtt
gattttgctgaaaatgacaaaggagctgatagaaacagagagcagggtcgtggtggacct
ggaatggctgcaattgttgaccctcaaaaacaattagggggcccagcaatccacggagaa
tctgtccaccatcagcccattggtctccatatagctattacagctgcagctgttatgact
ggagctcttggtgctgctcaggttggggttcaatcaaatcaaaatggtattcagagtcag
ttggcatcgcccaatgatcccttaactcttcatctggctaaaatgtccaggaatcagcta
aatgaaattatgtctgagatgaagttgatggctactcaaaataaggagcaagctcgccag
ctgttagttgcaaaacctcaactgctaaaagctctttttcaggcccaaataatgctagga
atggcgactccccaagtgtcgcaaatgccaattctccgacagggtccaggtcaccctgca
cagcctttatttcaagatggccagcagcaagtagctcaactccctggtctccccccactt
gcacagaagatgcaattgatgcccaaagttcaagaagctcaaattcagcttcataaccaa
ttttctgcagctacacagcccactgtgcatcctcaaattcagctgccacaaaatgccaag
aaccaagctctacagcaagcctccctacctgggcagtctggaattccaatgcttccttca
atgcacccctctgttagacctcaaattcagttggcaaattcctcttccttgaaccagcaa
gtacatcctccttcactagaaaaccaagtacaggtttcagcttccagtttagggcagaac
acgtggacaaaacttccaaattcagccatgcgatcttcctttttgcctcaccctccatca
tcagatgctggtttccagcctggaccctcaacatcagcaggcattggacagacagttagc
agggacgctgaaagaactgctagagttcctgaagatggaaccagggcgcatagaaataat
gcatatacaaacatgtctatgggtttagcctcaaaaagaagcacggttaatgatccttta
gattcaataagtcacccttcgaaaatagtgaaaacagaggatggaagtggcacttctttc
tctgtgggggctttgaatgtatctaaacccattggctctgcaccatcccaagcatttggg
gctggtttagtacctgtaaatcaagttcctaaagtagaagaggtgcaatattctgagaaa
caaatacctcagccgcagatctcacctgatgtagagtccgccttacttcagcaagtgttg
agtttaacgccagagcagctgaattcattgccacctgagcagcgtcaacaagtcattcag
ctccaacaggcattattgcgagatcaaatgcaaccatcctaa
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