Citrus x clementina (clementine): CICLE_v10001790mg
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Entry
CICLE_v10001790mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14962
COMPASS component SWD2
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CICLE_v10001790mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10001790mg
03036 Chromosome and associated proteins [BR:
cic03036
]
CICLE_v10001790mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CICLE_v10001790mg
Chromosome and associated proteins [BR:
cic03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
CICLE_v10001790mg
COMPASS/SET1 complex (yeast)
CICLE_v10001790mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WDR90_beta-prop_4th
KNTC1_N
VPS11_N
Beta-prop_IFT140_1st
PEP5_VPS11_N
Beta-prop_WDR35_TULP_N
PCYCGC
Motif
Other DBs
NCBI-GeneID:
18040708
NCBI-ProteinID:
XP_006431573
UniProt:
V4SB87
LinkDB
All DBs
Position
Unknown
AA seq
332 aa
AA seq
DB search
MVGSQSEREDKVSLELSEEILQSMEVGMSFRDYNGRISSMDFHKSSSYLVTASDDESIRL
YDVTAATCLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCSSKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFAVAF
GGYIRMFDARKYEKGPFDIFSVGGDISDANVVKFSNDGRLMLLTTMEGHIHVLDSFRGTL
LSTYNVKPVSRNSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSFDTEPPVIK
WTPGSLMFVTGSSELSFWIPDLSKLGAYVGRK
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggttgggtcacaatcagagagagaagacaaggtctcgttggagctctctgaagaaatt
cttcagagcatggaagtgggcatgtcttttagagattacaatggaagaattagttccatg
gattttcataaatcgtcgagttatttggtgactgctagtgatgatgaatctatacgcctg
tatgatgtcactgctgccacatgtttgaagacaattaatagcaaaaaatatggcgtggat
cttgtttgttttacttctcatcctacaacagtcatatactcctcaaagaatggttgggat
gaatctctacggcttctttccttgcatgataacaagtacttgcgttacttcaaaggtcac
catgacagggttgtttcacttagcctgtgctcatctaaagattgctttatctccggttct
cttgatcgaactgttctgctctgggatcagcgggctgagaaatgccagggtcttttgcgt
gttcaaggaaggcctgctgcagcatacgatgatcaagggcttgtctttgcagttgctttt
ggaggatacataagaatgtttgatgctcgcaagtatgagaagggtcctttcgacatcttc
tctgttggtggagatatatcagatgctaatgtcgtaaagttcagcaatgatgggagactt
atgcttctgaccactatggaaggacatattcatgtgcttgactcattccgaggcacactt
ctatccacttataatgtgaagccggtttctcgcaattccacactggaggcatctttcagc
cctgagggaatgtttgttatatcaggttctggtgatggtagtgtatacgcttggagtgta
aggagcgggaaagaggttgcaagttggatgagttttgatacagagcctcctgtcataaaa
tggacacctggaagtcttatgtttgttactgggtcatctgagctatcgttttggattcct
gatctgtctaaactaggagcttatgttggaaggaagtaa
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integrated database retrieval system
