Citrus x clementina (clementine): CICLE_v10003766mg
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Entry
CICLE_v10003766mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10003766mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10003766mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
CICLE_v10003766mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_17
TPR_8
TPR_16
TPR_14
TPR_12
TPR_19
TPR_9
TPR_7
TPR_20
BTAD
TPR_P4H
Y2_Tnp
DUF6584
Motif
Other DBs
NCBI-GeneID:
18041263
NCBI-ProteinID:
XP_006435493
UniProt:
V4SLV1
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
DDEKGALLLQLEDSLEANPDDPSLHLDLGLHLWENSESKEKAAEHFVIAAKLNPQNAVAF
RYLGHYYTRFSIDTQRAIKCYQRAVSLSPDDSVSGEALCELLEHGGKESLEVVVCREASD
KSPRAFWAFRRLGYLQLHHKKWSEAVQSLQHAIRGYPTSPHLWEALGLAYHRLGMFSAAI
KSYGRAIELDDTSIFPLLESGNIFLMLGNFRKGVEQFQLALKISSENVSAHYGLASGLLG
LAKQCINLGAFRWGASLLEDACKVAEANTRLAGNMSCIWKLHGDIQLTYAKCFPWAEERQ
SLEFDVETFSASIVSWKTTCLMAAISSKSSYQRALYLAPWQANIYTDIAITSDLIYSLNE
AYGHYQSAWHVSEKMALGALLLEGDNCQFWVTLGCLSNYNGLKQHALIRGLQLDVSLADA
WAHIGKLYGEVGEKKLARQAFDSARSIDPSLALPWAGMSADVQASESLVDDAFESCLRAV
QILPLAEFQIGLAKLAKLSGHLSSSQVFGAIQQAIQRGPHYPESHNLYGLVCEARSDYQA
AVVSYRLARYAISSSSGTVPNSHFQDISINLARSLSRAGNALDAVRECESLERQGMLDAE
VLQVYAFSLWQLGKYDLALSMARNLASSVSAMEQSSAAASVSFICRLLYHISGLDSTINS
ILKMPKGLFQCSKMSFIVSAIHALDHSNRLESVVSSSRNCIASPEEITGMHYLVALNKLV
KNGPESCLGFNSGIFHLRKVLHVYPNCNLIRNLLGYLLLSSDEWRYSHVASRCCSLETSD
CIKKEGPKSAWEILGAEGVACNVIGSVDLKFSFPTCIYEHLTGPKAVQELQKCLHREPWN
YNVRYLLVLNLLQKAREERFPRHLCTILQRLIHVALSCEFYSIQHTSYQYQKFQLLLCAS
EISLQGGNITGCINHAKSASALLLPDAYRFFGHLLLSRAYAAEGNMLNLQDEYVRCLELK
TDYVIGWMCLKVVESLYEVQADTNTIELSFNECLKQGNNSRLIWTAKFNLVLGFVFLWKK
DFFSAEKCLAQACSLAGAESCLFLCHGTICMEIARQYHDSHFLSLAVRSLTKAQKTSFVQ
LPVVSLLLAQAEGSLSSIEKWEKNLRLEWFTWPPEMRPAELFFQMHLLAMLSKAGSDSSS
RVEFCQSPQKWVLRAIHTNPSCLRYWKVLHKLF
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gatgacgaaaagggagcacttttattgcaactggaggattccttagaagccaatcctgat
gacccctccctccatttggatctcggcttgcacttgtgggagaactcagaatcgaaggaa
aaagcagctgaacattttgtaatagcagccaaattgaaccctcaaaatgcagttgctttc
cgatatttggggcattattacaccagattttctattgatacccaaagagctatcaagtgt
taccaaagagctgtctctctcagtcccgatgattctgtttctggggaagctttatgtgaa
ttgttggagcatggaggaaaggagagcttggaagttgtcgtgtgtagggaggcctcagac
aagtctccaagggctttctgggcatttcgtcgcctgggttatctgcaattgcatcacaag
aaatggtcagaagctgtccagagtcttcagcatgccatacgaggctatccaacctctcct
catctctgggaagctcttggtcttgcttaccaccggcttggcatgtttagtgctgctatt
aagtcctatgggcgagccattgaattggatgatacaagtatctttcctctgcttgaaagt
ggaaacatctttttgatgcttggtaatttcagaaagggagttgagcagtttcagctagct
ctcaagatttcatctgaaaatgtgtctgcacactatgggcttgcttctggtttgcttggt
ttagcaaaacaatgcattaatttgggtgcatttagatggggagcttcactgctggaggat
gcatgcaaagttgccgaagctaatactcgattagctggaaatatgtcatgtatatggaag
ttgcatggtgatattcagcttacatatgcaaaatgtttcccatgggcggaggagagacag
agtttagaatttgatgtggaaactttcagtgcttccattgtttcctggaagacgacttgc
cttatggctgccatatcttctaaaagttcttaccaacgagctttgtacttggccccgtgg
caagctaacatctatactgatattgcaataacttcagatctcatttactctttaaatgaa
gcttatggacattaccaaagtgcttggcatgtgtctgagaagatggctttgggggccttg
ttacttgagggtgacaactgccaattttgggtgacattggggtgtttatctaactataat
ggattaaaacagcatgctttaatcaggggattgcagctggatgtatctttagctgatgct
tgggcacacattgggaagctatatggagaagtgggtgagaagaagttagcaaggcaagca
tttgattcagccagaagtatagatccttcacttgcattaccatgggctggcatgtcagct
gatgttcaagctagcgaatccttagtggatgatgcttttgagagctgtttacgagctgtg
cagatattacctcttgctgagttccaaattggtctagctaagcttgctaaactgtcaggg
cacctttcatcttcacaggtttttggagccatccagcaggcaatacaacgtggtcctcat
tatcctgaatcccataacttgtatgggttagtttgtgaggcacggtctgactatcaagct
gccgttgtttcttataggctagcacgctatgcaattagctcttcttcaggcactgttcca
aattcccatttccaagatatatccattaacttggccagatcacttagtagggcagggaac
gcattggatgctgtacgagaatgtgaaagtttggaaagacaaggcatgcttgatgcggaa
gtattgcaagtatatgccttctctctgtggcaacttggtaaatatgacctggccctttcc
atggctagaaatctggcttcaagtgtgtctgccatggaacaatcatctgcagctgcgtct
gttagttttatctgccgattgctttaccacatctctggactcgattcaacaattaatagc
attctgaaaatgccaaaggggctgtttcagtgttcaaaaatgagcttcatagtgtctgcc
atccatgctcttgatcatagtaatcgccttgaatctgttgtttcaagcagtcgaaactgt
attgcatctcctgaagaaatcactggaatgcactatttagtagcacttaataaattggtt
aaaaatggacctgaatcctgccttggatttaatagtggaatattccacctcagaaaagtt
cttcatgtttaccctaattgtaatctgataaggaacttacttggttatctcttgctatca
agtgacgaatggagatattcacatgttgcaagtaggtgctgcagcctagagacatcggac
tgtataaaaaaggaaggtccaaagtcagcatgggagatccttggtgctgaaggggttgct
tgcaatgtcataggcagtgttgatcttaagttttcttttccaacctgtatttatgagcat
ttgactggacctaaagctgttcaagagttgcagaaatgcttgcatcgagaaccatggaac
tataacgtgcggtatttgcttgtacttaatcttttacaaaaggcacgcgaagagagattt
cctcggcatctctgtaccatacttcaacggctaattcatgtcgctctttcctgtgaattc
tattctatacaacatacatcttatcaataccaaaagtttcagcttcttctctgcgcttct
gagatcagtttgcaaggtggaaatattactgggtgtatcaaccatgcaaaaagtgcttca
gccctcttacttcctgatgcctaccgattttttggacacttgctactatcccgtgcctat
gctgcagaaggtaatatgttaaaccttcaggatgaatatgtaagatgtttagaactcaag
acagattatgtaattggctggatgtgtctcaaagtcgtggaatctctatatgaagtgcaa
gctgacacaaataccatagagttgagcttcaacgaatgcttaaaacaggggaataattcc
aggctgatttggactgctaaatttaatttggtgttgggttttgttttcctatggaagaag
gattttttttctgccgagaagtgtcttgcacaagcttgttcgttggcgggtgctgagagc
tgcctttttctgtgtcatggtaccatctgcatggagattgcaaggcagtatcacgattct
cattttttgtcactagcagtaagaagtcttaccaaagcccaaaaaacttccttcgttcag
ttgcctgtggtctcactattactggctcaagcggaaggaagcctatcttctatagaaaaa
tgggagaaaaaccttcgtctggaatggtttacttggccaccagaaatgaggcctgcagag
ctttttttccaaatgcatttgcttgcaatgttgtcgaaagctgggtctgactcttcctca
agagttgagttctgtcagagcccacagaaatgggttcttcgggcaatccatacaaaccct
tcttgtttaagatattggaaggttctgcataagcttttctaa
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integrated database retrieval system
