Citrus x clementina (clementine): CICLE_v10004117mg
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Entry
CICLE_v10004117mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
cic
Citrus x clementina (clementine)
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cic03009
]
CICLE_v10004117mg
Ribosome biogenesis [BR:
cic03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
CICLE_v10004117mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_EF3_N
HEAT
Motif
Other DBs
NCBI-GeneID:
18032343
NCBI-ProteinID:
XP_006421008
UniProt:
V4RJK0
LinkDB
All DBs
Position
Unknown
AA seq
2651 aa
AA seq
DB search
MATAEHAAAVKSLNKSPGRRRFVFKSFSQQIDDIEINVFRSLDKVKAEPSEGSSFLRDCL
IQWRELNTAEDFISFYEEIMPFVQTLPSIILHKELIFSKLISRLRFEARLSLEPILRLIA
ALSRDLLKDFLLFLPRIADSLVSLLESGADREPDIVEQIFTSWSFIMMYLQKYLIQDIIS
VLKITVKLRYYSKDYIQEFMAEATSFLLRNAPFKKLKAGIQKIMLEVVKKQSPARKSGVS
ALLYYVMRGTSSGVHSSAERVLKLLISQSVFSIGDKFNQGSDTIVEVLITAFQRICSNLG
SKEFMWENLYREIIDSVDNRCLFHLGCLLSLLIATVEIDNGQGVSDYQPVLELVDVLKRV
FITPSKNVKDVDHLFEVVDKVLQLMLCILNGLHGANDMDTITDCSSQWAPAFELKNSSSL
KFIGKLLQLDPCVVYTFRVNILSAINDMIENSQDEVICLLLSFFDKLQMEPECCNFLDGV
SEGRVLRIRGFLQEAVCSWISVINNVVAHGNSSSIEIDEAKLALLWGIVRCCPRIMDVQA
NSSLLMELIDALHRLSMDEAELFAGVSKHIWQSLIGASLSSYHELHCAKQSGLEETGKIM
CIGRSLCQLLITILPADNSHGKYHPELEAEKVEDAVVIYADNLCHSDKAIRVSTLRILCH
YEPLTYEDSTMDQPPEKKMKTETGVIHLLLSIEATPLSISTSRKLSLLISRIHMDLGAGR
ISETYIPLVLNGVLGIFHNRFSYLWNPASECLAVLISKHVGFVWNKLVRYFQHCQSIFQI
SQDELDKPSFKLPDKSADLVECFNLFVSPASDSTPHGTVLSLLLQSLQKVPSVVEAQSRQ
VIPLFLDFLAYNIDNLVSVGSFNSSICKGKEWKSVLKEWLNLLKLMRNPKTFYKSQFLKD
VLQNRLLDENDAEIQMKVLDCLLVWKDDFLIPYHQHLRNLINSKSLREELTTWSLSRESH
LIEDDHRSNLLPLVIRLLMPKVRKLKTLASRKHASIYHRKAVLCFVAQLDVDELPLFFAL
LIKSLEIIPKGADDGAFWEKPYCNMEEFQEYSFLKFFTIENLASLSWKKSHGFLHVIEDV
IRVFDELHVGPFLNLLIGCVVRVLASCTSSLEFLKGCGSSVVENHANTDSTLLAKDNLAG
KNQGQISSAMKQLKDIRSLCLRILSTVLNKYVDHDYDCDFWDLFFQSVKPLIDAFKQEGS
SSEKPSSLFSCFLAMSRSHRLISLLEREENLIPDIFSILTVMTASEAIVSSVLKFIENLL
NLDNEVDGEYSAIKKVLLPNVATLISSLHFLFQCAAKRKLVKYSGETVIRILQLLSQYIK
DPLEAGKFLDILLPFLAKGVKDSEVVVKVLHVLRDIIPVAGTGSTKKVLNALSPLLASVE
LDMRSSICDLLDSLAKADPSVFPVAKLVSELNATSAVEMGGLDYDSIVTAYDKIGIDLFH
TIEVDHSLVILSHCVRDMSSDEMILRHSAYRSLLSFVEFSSLILNRERCNTHEVMQAVDD
SLWTIGSIQRIINKFILKRMGEAMTRGSSVKKEWVDLLREMVLKLPQLSNLNSLKDLCSG
DTEVDFFNNIIHLQKHRRARALTRFRKVVSTSNISEGLVNKVFVPLFFNMLFDVQDENVR
SACSEALASISAHMKWKSYSALLMRCFQEMEKNPQKQKILLRLFCSIFDEFHFSQLCSSQ
EANDPSTNALDANLDNNSSSIILQNCHNSMTITEIKTCLNDTMLPKLQKLLYADSEKANV
DISRAVLKVLKLLPGDIMDSQLPSIIHRISNFLKSRSDGIRNSARIALADCLKELGLEYL
QFIVRVLRSILKRGYELHVMGYTLNFILSKSLSRSTSCKLDYCLEELLSVVGNDILGDVA
EQKEVEKIASKMIETRKQKSFETLELIAQNITFRSHASKLLSVVTAHLQNHLTPKVKSKL
ESMLNHIAAGIERNPSVDQTDLFVFIYDLVQKRIEEENDLHANSSSKGANNYKNDVRGKT
ISSGRVIVAKSTCSHLITVFALGLLHKHLKNLKLKKHDEELLSKCLAPLISLPLPSLKSQ
ADKMKATLLDIAHSSATSSSLLMQSCLNLLTKLLRTTDVTLSSDQLHELIQFPLFVDLER
NPSDLALSLLKAIVNRKLVVPEIYDVVIQVAELMVTSQEESIRKKCSHILLQFLLDYQLS
DKRLQQHLDFLLANLRHHPSGREAVLEMLHVIIKKFPQTKLDEQSNTLFLHLVFRLVNDP
DNTVRLMIGVALKLLVGRISPHSLYSILEYSLSWYLDGMQQLQSAGAQVLGLLVEVMKKD
FQEHIDIVLQEAISILQSTKNIVEQQLDLPDETTIPFWKDAYYSLVLLEKILCHFPDILL
DTRLENLWEAICELLLHPHTWLRNISNRLIAMYFAAVTEARREDGEKSFGDFFLIKPSRV
FMIAVSLCCQLETQDSFEDAFSNHITENLVSAICNMHSFRGYMECADFQNFWSNLGQHEQ
GLFLRAFQLLDLRKGRGLFLSIISGAGDQNDCLASGDFQYLLVSNLLKKMGKIALQKDAT
IQMKIIFNTFRLISSKISQDYLQRYVVHMLPSLYKVCEGFAGKNIPDDLKQLAKEVSDSI
RDTLGGQIFVQVYNEIRKNLKAKRDKRKQEDKRMAVVNPMRNAKRKLRVAAKHRANKKRK
IMTMGMGRWLR
NT seq
7956 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcagaacacgctgcggccgtcaagtctctcaacaagtcccccggccgtcgc
cgcttcgtctttaagagtttctctcaacaaatagatgacatcgaaatcaatgtattcaga
agccttgataaggttaaagccgagccatcggagggctcctcatttttgcgcgattgcctc
attcaatggagagaattaaatactgcagaggattttatttccttttacgaggaaattatg
ccttttgtacagactctgccttcaataatattgcacaaggaattaatattctcaaaactt
atttcgagattacgttttgaagcaagactatcacttgagcctattctcaggctgattgca
gctttatcaagggatctccttaaggattttttactttttttgcctaggattgctgattct
ctggtttctctcctggaaagtggtgctgatagggagccagatattgttgagcagattttt
acttcttggtcatttatcatgatgtatttgcagaaatatcttattcaagatataataagt
gttctcaagatcacggtaaaactaagatattactcaaaggattatatccaggaatttatg
gctgaggctacatcattcttgctgaggaatgcaccttttaagaagcttaaagcaggtatc
caaaagatcatgttagaggttgtgaagaaacaatcacctgcccgaaaatctggagtcagt
gctttgctttattatgttatgagaggaacatcatcaggggttcattcaagcgcagagcga
gttttgaagttattgattagccagtctgtattttctattggtgataagttcaatcaaggt
tcagacactattgttgaagttctgatcacagcttttcagagaatatgttctaatctggga
tcaaaggagtttatgtgggaaaacttatatcgagaaataattgactctgtagataataga
tgcctttttcatcttggttgccttttgtcactgcttattgctacggttgaaattgataat
ggtcaaggagtttctgattatcaaccagtgcttgaactcgtggatgttcttaaacgtgtg
tttatcacgccttccaagaatgttaaggatgtagatcatttatttgaagttgttgataag
gttctgcaactaatgctgtgcattctcaatgggcttcatggagcaaatgatatggacact
atcacagactgttcttcgcaatgggctcctgcatttgagttgaagaattcaagttcgttg
aaatttattggaaagctactacaattggacccttgcgtagtctatacatttagagtgaat
atattaagtgcaataaatgatatgatagaaaattcacaggacgaagttatttgtctactg
ttgtccttctttgacaaactgcaaatggaacctgagtgctgtaacttcttagatggagta
tcagaaggacgagtcttgaggattcgcggtttcttgcaggaggctgtctgctcttggatc
agcgtgataaataatgttgttgctcatggaaattcatcatctattgaaattgatgaggct
aaattggctctgctttggggaattgtcagatgctgtcctcgtataatggatgtgcaagca
aactcatcgttgctgatggagctgatagatgcacttcatcggctttcaatggatgaagct
gaactttttgcaggtgtttctaagcacatatggcaaagcctaattggagcttctttatct
tcctatcatgaattgcattgtgcgaagcaatctggacttgaagaaacaggcaaaattatg
tgcataggtaggtctttgtgtcaattgttgataactatattgccagcagacaatagccat
ggaaaataccacccagagctagaagcagaaaaggttgaggacgcagttgtcatatatgca
gataatttgtgccactcagacaaggcaatccgtgtttcaactcttagaatcttgtgtcac
tacgaacctttaacttatgaagactctacgatggatcaaccgcctgagaagaaaatgaaa
actgaaactggtgttattcatctgcttctctccattgaggcaacacctctttcaatatct
acaagcaggaagttatccctactcatctctagaatacatatggacctaggcgctggaagg
atatctgaaacttatataccccttgtgttgaatggggttcttggtatcttccataatcgt
tttagctatctgtggaatccagcatctgagtgccttgcagttctgattagcaagcatgtt
ggatttgtgtggaataaacttgttcgttactttcaacattgtcaatccatttttcagata
tctcaagatgaacttgacaagccgagttttaagttgcctgacaagtctgctgatctggtc
gagtgttttaatttgtttgtttctccggcgtctgatagcaccccacatggaacagtgttg
tctctgttgcttcagtccttgcaaaaagttccttctgttgttgaggctcagtctcgacaa
gttatacctctgttcttggactttttggcctacaatattgacaatcttgtaagtgtggga
tcattcaattcaagtatttgcaaaggcaaagagtggaagagtgtccttaaagaatggctg
aacttgttgaaactgatgcgaaaccccaagactttttataaaagtcaatttttaaaggat
gttctacaaaataggcttctggatgaaaatgatgctgaaatacagatgaaggttcttgat
tgccttttggtgtggaaagatgatttcttaatcccttatcatcagcatttaagaaacttg
atcaattcaaaaagtttgagagaagaactgacaacatggagtttatctagagaatcacat
ctaattgaagatgatcacagatctaatcttctgcctttggttattcgtctcttgatgcca
aaagtcagaaaattgaagacgcttgcctctcgaaagcatgcaagtatatatcatcgaaag
gcggttctgtgtttcgtagctcaactagatgttgatgaactccctctcttctttgcattg
ttaataaagtccctggaaattattcccaagggagctgatgatggagcattttgggaaaaa
ccctattgcaatatggaggaatttcaagaatatagtttcttgaagtttttcaccatagaa
aacttagcatctctgtcgtggaaaaagagtcatggttttctgcatgtaattgaagacgtt
attcgagtttttgatgaattacatgttgggccttttcttaatttactgattggatgtgtt
gttcgggtattggcaagctgcacttcaagtcttgaatttttaaaaggttgcggatcttct
gtagtggaaaatcatgcaaatactgactcaactttactggcgaaagacaatcttgcagga
aaaaatcagggccagatcagttcagccatgaagcagctcaaggatataagatctttatgt
ctgagaatactttccactgttcttaataagtatgtggatcatgattatgattgtgatttc
tgggacctgttctttcagtcggtgaaacctttgatcgatgctttcaagcaggagggttct
agtagtgagaaaccaagttcactgttctcttgctttttggccatgagcagaagccacagg
ctcatatctctattagaaagggaagaaaatctgatccctgatatattttcaattttaact
gtcatgactgcctctgaagcaattgtatcaagtgttctgaagttcattgagaacctgttg
aatcttgataatgaggtggatggtgaatacagtgctattaaaaaagttctactgccaaat
gttgcaacacttatcagcagcttgcattttctctttcagtgtgcagccaagaggaaattg
gtcaaatactctggggagactgtgattagaattttgcaattgttatcccagtatattaaa
gatccattggaagctgggaagtttttggatatcttgctacccttcttagcaaagggagtt
aaagattcagaagtcgtagtgaaagttctgcatgttcttcgtgatatcataccagtagca
gggactgggagtactaaaaaagttctcaatgcactttctccacttcttgcttctgtcgag
ttggatatgcggtcttctatctgtgatcttcttgattctctcgcaaaagctgacccttct
gtgttccctgtggcaaaacttgtctctgagttgaatgcaacctctgctgtagaaatgggt
ggccttgattatgattctatagttacagcatatgacaagattggcattgatttattccat
actatagaagttgaccactcattagtcattttgtcacactgtgtgcgcgatatgtcatca
gacgaaatgatcctgaggcatagtgcatatcgatcacttctctcatttgttgaattttct
tctctaattctcaatagagaaaggtgcaatacacatgaagtgatgcaagcagttgatgac
agtttgtggacaataggatccattcagcgcataataaacaagtttatcttgaagcgtatg
ggtgaggcaatgaccagaggaagtagcgtgaaaaaggaatgggttgatttactgagagag
atggtgttgaagctcccacaattatcaaatcttaattcactgaaagacctgtgctctggg
gatactgaagtagattttttcaataatattattcacttgcagaaacataggagagcacga
gcactgacgcgttttaggaaagttgttagtacaagcaacatatcagagggacttgtgaat
aaagtgtttgtcccactatttttcaacatgttgtttgatgtacaagacgaaaatgttaga
agtgcatgctctgaagctcttgcttcaatttccgctcatatgaaatggaagtcatactct
gctttgttgatgagatgctttcaggagatggaaaagaatccacagaagcaaaagattttg
ctgaggctattttgctctatttttgatgagttccatttttctcaactttgttccagccaa
gaagccaatgacccttcgactaatgctttagatgctaaccttgataataatagttcttca
attatattgcaaaattgtcataattctatgacgatcacagagataaagacatgccttaat
gacactatgctcccaaagttgcaaaagctactgtatgctgattctgagaaggccaatgtt
gacatcagtcgagctgtgttgaaagtactgaagttgcttccaggagacataatggactca
caacttccgagtatcattcatcgcatttcaaacttcttaaagagtcgttcggatggcatt
cgcaatagtgctaggatagctttagctgattgtttgaaggagcttgggctggaatacttg
cagtttatcgtacgggttttgcgatctatcttgaagcggggctatgagctgcatgtgatg
ggatacacgctcaactttattttgtcaaaatctctttcaagatccaccagctgtaagttg
gattattgtttggaagaactgctatctgtagtggggaatgatattcttggagatgttgct
gaacagaaagaggtggaaaaaattgcttctaaaatgattgaaactaggaaacaaaaatct
tttgagactctggaattgattgcccagaacataacatttcgaagtcatgcctcaaaactt
ctctctgttgtaactgctcatttacagaatcatctgacaccaaaagtgaagtcaaaattg
gaaagcatgctaaatcacattgctgctggtattgaacgcaacccctcagtggaccaaact
gacctatttgtcttcatatatgaccttgttcaaaaaagaattgaggaagaaaatgatctg
catgcaaattcttctagtaaaggagccaacaattataaaaatgatgtgagagggaaaacc
atttcttcagggcgggtaatcgttgctaaatcaacatgttcacatcttataacagtgttt
gctcttggactactgcacaaacatttaaagaatttgaaattgaagaaacatgatgaagaa
ctgttatcaaaatgtcttgccccattaataagtctgccactgccgtctctcaaatcccaa
gctgataagatgaaggctactctgttggatatcgcccacagttcagcaacttccagcagt
ctgttaatgcagtcatgtctaaatttgttgactaagcttctgcgcaccactgatgttacc
ctttcttcagatcaactgcatgagttaattcaatttcctttgtttgttgatcttgaaagg
aatccctctgatttagctctttcacttctaaaggcgattgttaatcgcaagctagtcgtt
cctgagatatatgatgttgtaattcaagttgcagagctgatggtaacaagtcaagaagaa
tcaattcgcaagaaatgcagccatattttgttgcaattcttgcttgattatcaactttca
gataaacggttgcaacaacatttggattttctgctggcaaatctgaggcatcatccaagt
ggaagggaagccgtgcttgaaatgctacatgtaattataaagaaatttccacaaactaaa
ttggatgagcaatctaacacgttatttctccatttggtgttccgtttggttaatgaccct
gataatacagtccggttaatgattggtgtagctctaaaactgcttgtcggacgcataagt
ccacattcgctatattccatactggagtacagtctatcttggtatttagacggaatgcag
caactccagagtgctggtgcacaggtcttgggattgctggttgaagttatgaagaaagac
tttcaggagcatattgatattgtattgcaagaggcaataagcattttacagtccactaaa
aatattgtggaacagcaactggatcttcctgatgagaccaccattcccttctggaaagat
gcgtactattcactagttctgttggagaagatcctctgtcacttccctgatattttgctg
gatacgcgtctggagaatttatgggaagcaatttgtgagttgttgttgcacccccataca
tggttgcgtaatatatcaaatcgccttatagccatgtattttgctgctgttactgaagct
cgcagggaagacggcgagaagtcatttggagatttcttcctgattaagccaagtagagtc
tttatgatagctgtttcactatgctgtcagctagagacccaagattcttttgaagatgct
ttcagcaaccatattaccgagaatcttgtgtctgcaatctgtaatatgcattctttcaga
ggatatatggaatgtgcagattttcaaaacttctggtctaaccttggacaacatgagcag
ggtctatttcttagagcttttcagttgcttgacttgagaaaaggaagaggattgtttcta
tctattatctctggagcaggtgaccaaaatgattgtcttgcctctggtgatttccagtat
ttgctcgtctccaatttgctcaaaaagatgggaaagattgctcttcaaaaggatgctact
attcagatgaaaatcatcttcaacacttttaggctcatttcatcaaaaattagtcaggac
tacttgcagcgctacgtggttcatatgctgccatcattgtataaagtttgtgaaggattt
gcggggaagaatatccctgatgatctaaagcaattagcaaaagaagtaagcgatagcata
cgggatacattaggcggccagatttttgtacaggtctataatgagatcagaaagaatctc
aaggcaaaaagggataagaggaaacaagaggacaagcgtatggcagtagtcaacccaatg
cggaatgccaagaggaagttgagagttgctgccaagcatcgtgccaacaagaagaggaag
attatgacaatgggaatggggagatggttacgttag
DBGET
integrated database retrieval system