Citrus x clementina (clementine): CICLE_v10004124mg
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Entry
CICLE_v10004124mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10004124mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10004124mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CICLE_v10004124mg
Spliceosome [BR:
cic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CICLE_v10004124mg
Complex C
U5 SnRNP specific factors
CICLE_v10004124mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_11
AAA_30
NBAS_11th
Motif
Other DBs
NCBI-GeneID:
18032967
NCBI-ProteinID:
XP_006421928
UniProt:
V4RLU7
LinkDB
All DBs
Position
Unknown
AA seq
2086 aa
AA seq
DB search
MFNDYRANSSLVLTTDSRPRDTHELTGEPESLWGKIDPKSFGDRVYRGRSPELEERLRKS
KKRDADADDDAAALVRQSKRRRLRLHEESVLLAASEEGTYKPKTNETRAAYRAMLSVIQQ
QLGGQPLSIVSAAADEILAVLKDDSVEKPDKKKDIEKLLNPIPNHVFDQLVSIGKLITDY
NQDAGYGSAENDTSEVLDDDTVVAVEFEDNGNDEEQSDLDMVPEDEEEEDEDVVESNASG
GAMQMGVGGGDDDESRDANEGTGLNVQDIDAYWLQRKISQAFDQQIDPQRCQKLAEEVLK
VLADGEGDDRELENKLLYHFQFDKFSPFKLLLSNRFKVVWCTRLARAQDQEERKNIEEEM
MGLGPDLAPILEQLHATRATAKERQRTWKRCCCIVDRDTNAEDGGWFGQRQLLDLDTLAF
QQGGLFMANKKCVFPSGSTTTRFTSKGYEEIQVPAMKPKPLDPNEKLIKISEMPEWAQPA
FKGMTELNRVQSRVYETALFSADNILLCAPTGAGKTNVAVLTILEQLSLNKNNDGSFNRS
NYKIIYVAPMKALVAEVVGNLSNRLQIYDVKVRELSADQTLTRQQIEETQIIVTTPEKWD
IITRKSGDRVYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTEEHIRLVGLSAT
LPNYEDVAQFLRVNLEKGLFHFDNSYRPKPLERFKLMSELCYEKVMAVAEKHQVVIFVHS
RKETAKTARAIRDSALQDDALGRFLKEDSVSCEILQSHTDLVKSNDLKDLLPYGFAIHHA
GMKRGDRQLVEDLFCDGHVQVLVSTANLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPL
DIMQMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLAELLNAEIVL
GTVQNAKEACNWIEYTYLYTRMLRNPVLYGLSPEVLDITLGERITDLIHTAANVLDRNNL
VKYGRKSGYFQVTDLGRIASYYYITHGTISTYNKHLKPTMGDIELCRLFSLSEEFKYVTL
LDRVPIPVKESLEEPSAKINVLLQTYISQLKLEGLSLTSDMSAGRLSRALFEIVLKRGWS
QLAEKALKLSKMVTKRMWSVQTPLRQFNGIPNEILMKYYDLSSQELGELIRYRKMGRTLH
KFVHQFPKLILAAHVQPITRTVLRVELTKTPDFQWDDKVHGYVELFWVIVEDNDGDYILH
HEYFLLKKQYTEEDHSLNFTVPIYEPLPPQHLILPEKFPPPTELLDLQLLPVTALQNPSY
EALYQNYKLFNPIQTQVFAVLYNTEDNVLVAALKAEDNSSSHMQLRVDDMACQLEPGSGK
TICAEFAILRNHKKASETGVMRAVYIAPIEALAKQRYCDWERKFGKELGMCVVELTVETA
MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGRPVLEVIVAR
MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGVFNFPPGVRPVPLEIQIQGVDIT
NFEARMKAMTKPTYTAIMQHAKNEKPALVFVPSRKYARLTAVDLMIYSCKDSDQKSAFLL
CSAKEVEPHVSIIQEEMLRATLRLGVGYLHEGLNKSDQEVVSTLFEAGKIKVCVMSSSMC
WEVPLTAHLAVVMGTRYFDGQENAHIDYPKCVILCHAPHKEYYKKFLYEAFPVESHLHHF
LHDNFNAEIVAGVIENKQDAVDYLTWTFRLTQNPNYYNLQGVSHRHLSDHLSELVENTIS
DLEATRSIIMEDDMDLCPSNYGMIASYYYISYKTIECFSSSLTSKTKMKGLLEVLASASE
YAQLPIRPGEEELVRRLINHQRFSFANPKCTDPHVKANALLQAHFSARHVEGNLKLDQEK
VLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWEHDSMLLQLPHFTKDLAKRC
QENPGRSIETVFDLLEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSYKVQDSENVRA
GGEDTTLQVVLERDLGGRTELGPVYSNRYPKAKEEGWWLVVDDAKTNQLLAIKRVSLQRK
SRAKLDFAAPVEGGKKRYTLDFMCDSYMGCDQEYSFTVDVKEAGEE
NT seq
6261 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgattacagagcaaactctagtttagttttaacaaccgactctcgtccacgt
gatactcacgagctgaccggtgagccggagtctctatggggaaagattgatcccaaaagt
tttggtgatcgggtttacagaggaaggtcccctgagttggaggagagattgaggaaatct
aagaagcgtgacgcggatgccgatgatgatgctgcggcccttgttcgtcagagcaaaaga
cgtcgtctccgtctccatgaagagagtgtacttttggcggcgtctgaagaaggaacttat
aagcccaaaaccaacgaaaccagggcggcttatagggctatgcttagtgttattcaacaa
cagttgggtggacagccacttagcattgttagtgctgctgctgatgagattttggctgtt
cttaaggatgattctgttgaaaaacctgataagaagaaggacattgagaagttgttgaac
ccgattcccaatcacgtgtttgatcagcttgtttctattgggaagcttattacagattat
aaccaagatgcgggttatggtagtgctgagaatgataccagtgaggttcttgatgatgat
acggttgtggctgttgagtttgaagacaatggtaatgatgaggaacagagtgatttggat
atggtgccggaagatgaagaagaagaggatgaagatgtggttgaatccaatgcttctgga
ggagctatgcaaatgggtgttgggggtggggatgatgatgagtcacgtgatgccaatgag
ggcacaggtcttaatgtccaggatattgatgcttattggcttcagaggaaaatctctcaa
gcttttgaccaacagattgacccgcagaggtgccaaaagcttgcagaagaggttcttaag
gtacttgctgatggggagggggatgacagggaacttgagaataagctgctttatcatttt
cagtttgataagttcagtccttttaagcttttgttgtccaacaggttcaaggttgtatgg
tgtactcgtttggcaagagcccaagaccaagaggagagaaagaatatcgaggaggaaatg
atgggtttgggtccggatttggctccaatattggagcagttgcacgcaacaagggctact
gctaaagagaggcaaagaacctggaaaagatgctgctgcattgttgacagggatacaaat
gcagaagatggtggttggtttggccagcgtcagttgctcgatctggacacccttgctttt
caacaaggtgggctttttatggcaaataaaaagtgtgtttttcctagtgggtctacaaca
acaagatttacaagtaaggggtatgaagaaattcaagtgccggctatgaagcctaagcct
ttagatcccaatgaaaagttgattaagatatctgaaatgccagaatgggcacagccagct
ttcaaaggaatgacagagttgaacagagtgcagagtagagtctatgagaccgctctcttt
tcagccgataacattctgttgtgtgcgcccactggggcagggaaaactaatgttgcagtg
cttaccatacttgaacagttatcgttgaacaagaacaatgatggttcattcaatcgtagc
aattataagataatctatgtggcacctatgaaagctcttgtcgctgaagttgtaggcaat
ttgtctaaccgtttgcaaatatatgatgttaaggtaagggagctgagtgcagaccagaca
ctcactcgccaacaaattgaagaaacgcaaataattgtgacaactcctgagaagtgggat
attattacaaggaaatctggggatcgggtctacacacagcttgtgaaactgctgattatt
gatgaaattcatctgcttcatgataatagaggacctgtgcttgaaagtattgtcgccaga
actgttaggcagattgaaaccacagaagagcatatccggttggttggtttatctgctacc
cttcctaattatgaagatgtggcacagtttttacgcgtgaatttggagaaagggttattc
cattttgacaatagttacagacctaagccactggaaaggtttaagttgatgagtgagtta
tgttatgagaaggttatggctgttgctgaaaagcatcaagttgttatttttgtccactcg
aggaaggagacagcaaaaacagctcgtgcaatacgagattctgcacttcaggatgatgcc
cttggtagattcttaaaggaagacagtgtgagctgtgagattctacaaagtcacacagat
ctggtcaagagcaacgatcttaaagatcttctgccatatggtttcgcaattcatcatgct
gggatgaaaaggggtgaccgtcaacttgttgaggatcttttttgtgatgggcatgtacag
gtattagtttccactgcaaatcttgcttggggcgtgaacttgcctgctcatacagtgatc
atcaaaggaacccaggtttacaatccagagaaaggggcgtggacggagcttagtcctctg
gatattatgcagatgcttggtcgtgctggaaggcctcagtatgattcatatggggaaggc
atcatcattactggtcactctgaactgcagtactatctttctttaatgaatcagcagctc
cctattgaaagtcagttcgtgtccaagcttgctgaactgttgaatgcagaaatagtcctt
ggaactgtacaaaatgctaaagaagcctgcaactggattgaatacacttacttatatact
cgtatgttacgaaatcctgtgctctatggtttgtcacctgaggttctcgacataacactg
ggggagaggattactgatttgattcatacggctgccaatgtcttggacagaaataatttg
gtcaagtatggtaggaaaagtgggtatttccaagttacggacttgggtcgtattgccagc
tattactacataactcatgggacaatatccacatataacaagcatttgaagccaacaatg
ggggacatagagctttgtcggttgttctcgctcagcgaagaatttaaatatgtgacactt
ttagatcgtgttccgatccctgtaaaggaaagcctcgaagagcctagtgccaagattaat
gttttgctgcagacatatatctcccagctgaagcttgaagggctttcattgacttctgac
atgagtgccggacgcctttcgcgagcgctttttgagattgtcttgaaacgaggttggtca
caactagctgagaaagcattgaagttgagcaaaatggttaccaagaggatgtggagtgtc
caaacacctctccgccagttcaacgggatcccaaatgaaattttaatgaagtactatgat
ctctcatcacaggagcttggtgaactcattcgttaccgcaagatgggcagaactcttcac
aagttcgtccaccaattcccaaaactaatacttgcagcacatgtccagccaattactcgt
actgttttgagggttgaacttacaaaaacgccagactttcagtgggatgacaaggtccat
ggatatgtggagctattttgggtaattgtggaggataatgatggtgattatattcttcat
cacgaatattttctgctgaagaaacagtatacagaagaggaccactctctgaatttcacc
gtgcctatctatgaaccattgccgcctcagcaccttattttaccagaaaaatttccacct
cctacagagctcttggacttgcaacttctacctgtgacagcattgcaaaatccatcatac
gaagctctttatcagaactataaactttttaatcctatccagactcaggtttttgctgtg
ttgtataatacggaagataatgtcttagttgctgccctcaaagcagaggataacagcagc
agtcacatgcagttacgagtagatgacatggcatgccagctggagcctgggagtggaaag
accatatgtgcagagtttgccattttgaggaatcataaaaaggcatctgaaactggtgtc
atgcgtgctgtgtatattgcacccattgaagctcttgccaaacaacgttactgtgactgg
gagagaaagtttggcaaggaacttggaatgtgtgtggttgaattgactgtggaaacagct
atggacctgaaacttcttgagaaaggtcaaataattattagcactccggagaaatgggat
gctttatcacgccgctggaagcagaggaaatatgtccagcaggttagtcttttcatcatt
gatgaactgcacttgattgggggtcaaggccgtcctgtcttggaggtgattgttgctagg
atgagatatattgccagtcaggttgagaacaagatccgtattgtggctttgtcaacttct
cttgcaaatgccaaggaccttggtgaatggattggggcttcctctcacggcgttttcaat
tttccccctggtgtccgccctgtgcccctggaaatacagattcagggagtggatataacc
aattttgaagcaaggatgaaagctatgacaaaacccacatacactgcaatcatgcaacat
gccaagaatgaaaagcccgctcttgtatttgtcccatcaagaaagtatgctagactcaca
gctgttgatctgatgatatattcatgtaaggacagtgatcagaaatcagcctttctattg
tgttcagctaaagaggtggagccacatgtgtctatcatccaggaggagatgttgagagcc
actttacgtcttggagtgggctacttgcatgagggtttaaataaatcagatcaagaggtt
gtatcaactctgtttgaagctggcaagattaaggtttgtgttatgagtagttcaatgtgt
tgggaagtcccattgacagctcatttggcggttgtcatgggaacacggtattttgatggg
caggaaaatgctcatattgactaccctaaatgtgtcatcctctgccatgctcctcataaa
gaatactacaagaagtttctgtacgaagcttttccagtggaaagtcatttgcaccatttc
ctgcatgataattttaatgcagaaattgtggcaggagttattgaaaacaagcaagatgct
gtggactatcttacttggacgttcaggctcactcaaaatccaaattattacaacctccaa
ggtgtaagtcacaggcatctctctgatcacctctcggagctcgttgagaacacaataagt
gatttggaagcaaccaggtctatcattatggaagacgatatggacctttgtccttcgaat
tacggcatgattgcttcttactactatatcagttataagactattgaatgtttcagttct
tctctgacttccaagacaaagatgaagggtcttctggaggttcttgcttcggcatcagag
tatgcacaactgcctatacgaccaggtgaggaagaactggttcgtaggctaattaatcat
cagaggttctcatttgcgaatcccaaatgcacggacccacatgtcaaggcaaatgctctt
cttcaagctcacttctctgcgcggcatgtggagggtaacctcaaattggaccaggaaaag
gttctcctttctgctagtaggttgcttcaggcgatggttgatgtaatttcaagtaatggt
tggttgagccttgcacttctagcaatggaagtgagtcaaatggtgacacaaggcatgtgg
gaacatgattccatgcttctgcagctcccacatttcacaaaagatttggccaagagatgc
caagagaaccctggtagaagtattgagacggtgtttgatttgctggaaatggaggatgat
gagaggcgtgaacttttgcaaatgtcggatgtacagttgcttgatattgccaggttttgc
aaccgttttcccaacattgacatgtcgtacaaggtgcaggacagtgaaaatgtaagggct
ggtggggaagacaccacgttgcaggtggttcttgagcgggatctaggaggaaggacagag
ttgggacccgtttattccaacagatatcctaaagccaaagaggaaggctggtggcttgtt
gtagatgatgcaaagactaaccaattgcttgccatcaagagggtgtctctccaaagaaag
tccagggcaaagcttgattttgctgctcctgtagaaggtgggaaaaagagatacacgctc
gatttcatgtgcgattcatatatgggctgtgaccaggaatatagctttactgttgatgtc
aaagaagcaggtgaagagtaa
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integrated database retrieval system
