Citrus x clementina (clementine): CICLE_v10005021mg
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Entry
CICLE_v10005021mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10005021mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cic03041
]
CICLE_v10005021mg
Spliceosome [BR:
cic03041
]
Common components
Common spliceosomal components
SR proteins
CICLE_v10005021mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RNA_bind
Nup35_RRM_2
RRM_5
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
18031836
NCBI-ProteinID:
XP_006421852
UniProt:
V4S432
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MSKSVSVYQCHYLLIVYSHSVWPVQKKYLPRRLYVLGFRRSHSQLSIAAFEVAMMRPIFC
GNFEYDARQSDLERLFRRYGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFGRKGRR
LRVEWTKHERGIRRPGGGSSARRPSTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKII
SVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNGHSPDRNRDR
SPDRGRRRSPSPYRRERGSPDYGRGSSRSPYRRERGSPDYGRVRSPSPYRRDRGSPDYGR
NSSRSPYKKERAAIGHGRGPSRSPYRRDRGSPENGHGSSPSPYRKGKPSPNNGRGPSRSP
YERERPSPENGRGGSRSPYRRERPSPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSR
SPPAED
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaatcggtctccgtatatcaatgtcattatctgttaattgtttattcacactct
gtttggccggttcaaaaaaaatatctccctagaagactttacgttctaggttttcgaaga
tcacattcacagctatcaatcgccgctttcgaagtagctatgatgaggcctatcttctgt
gggaactttgagtatgatgctcgtcagtctgatctggagcggcttttcagaagatatgga
aaagttgatagagtggatatgaagtctggatttgcatttatctatatggatgatgagaga
gatgctgaggatgcaattcgagggctcgatcgaactgaattcggtcgtaagggacgcaga
cttcgtgttgaatggacaaagcatgaacgaggaatcagaaggcctggggggggttcaagc
gcaagaagaccttcaacaaatacaagaccttcaaagaccttgtttgtcattaattttgat
ccatatcatacgcgcaccagggacttagaaaggcactttgagccatatggaaaaataata
agtgttaggatcagaaggaattttgcatttgttcaatatgaagtgcaggaggatgccacc
agagcattggatgctacaaacatgagcaagttgacggatcgagttatttcagtggaatat
gcagttcgtgatgacgatgaccggagaaatggacacagtcctgatagaaatcgcgatagg
tcaccagataggggtaggaggagatctccaagtccctatagaagggaaagaggtagtcct
gattatggccgtggctctagccgaagtccttacaggagagagaggggtagccctgattat
ggtcgtgttagaagcccaagtccctataggagggatcggggtagccctgattacggtcgt
aactccagccgcagtccttacaagaaagagagagctgctattggtcatggtcgaggccct
agccgtagtccttatcggagggacagaggtagtcctgagaatggtcatggatccagtcct
agtccttatcgtaaggggaaacctagtcctaacaatggtcgtggccccagccgcagtcca
tatgaaagagagaggcctagtcctgaaaatggtcgtggaggcagccgaagtccctataga
agagagaggcctagccctgacaatggtcgtgttcccagtccaaattcaatgcctgaacct
agggatagccctggttatgatggagctgacagccctatcaatgagagataccgcagtcgt
tcacctccagccgaggactga
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