KEGG   Citrus x clementina (clementine): CICLE_v10006458mg
Entry
CICLE_v10006458mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CICLE_v10006458mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cic03041]
    CICLE_v10006458mg
Spliceosome [BR:cic03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    CICLE_v10006458mg
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML PRP4 WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_RIG_2nd eIF2A Nbas_N WD40_like
Other DBs
NCBI-GeneID: 18033580
NCBI-ProteinID: XP_006421197
UniProt: V4S2B5
LinkDB
Position
Unknown
AA seq 521 aa
MAAEEENPVSTSLPVSSAAVPDSQALISTIEVTPSQPVQPIIPPVIPPMVSAVVPPIAPI
STIPPPQVPAPLAPLPVRPPVFKPPVPAQNGEVRTSDSESDRDEPGPTRASAVEYEISEE
SRQVRERQEKAKQDLLMKRRAAVLAVPTNDMAVRARLRRLGEPITFFGEREMERRDRLRM
LMAKLDSEGQLDRLMKALEEEEAAATATGADVEEEMLQYPFYTEGSKALLDARVDIAKYS
IAKAAKRLQQAQRRRDNPDESIDEEIDYALKKVESLYLDCTESGDDRPLSGCSYSRDGNL
LATSSLSGVVKIWSMPGLQKFSALKGHTERATDVTFSPVSNHVATSSADRTARLWNTDGS
LLNTFQGHLDRLARIAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFH
PDGSLAASCGLDALTRVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIW
DLRKRKSLYVIPAHSNLISQLKFEPQEGYFLVTGSYDMTVK
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggcggctgaagaggaaaacccggtatcaacttcactgccagtgtcttccgctgcagtc
cctgatagtcaagcactgatatctacaattgaagtaactccatctcaaccggttcagcct
attatcccaccagttatcccacctatggtttcggcagttgtgcctcctattgctccgata
tccacaattccacctcctcaagttcctgctccattagcaccacttcctgtacgccccccg
gtgtttaagcctccagtgccagcacagaatggtgaggtcagaactagtgactctgagtct
gaccgtgatgaacctgggccaacccgggcttctgcagttgaatatgagatttcggaagag
agcagacaggtgagggagcgacaggaaaaggcaaagcaagatctgcttatgaaacggcgt
gctgctgtgctagcagtgcccactaatgatatggctgtccgtgctcgacttcgtcggctt
ggagagcccataacattttttggagaacgagagatggaaaggcgggacaggctgcggatg
cttatggcaaagctcgattctgaagggcagttagataggctgatgaaagctcttgaggag
gaggaggctgcagcaactgctactggggcagatgttgaggaagaaatgctccagtacccc
ttctatactgaggggtcaaaggctctcttggatgccagagtagatattgctaagtattct
atcgcgaaggcagcaaagcgcctacaacaagcacagaggagaagggataatcccgatgaa
tctattgatgaggaaattgattacgctcttaaaaaggtggagagtttgtacctcgattgc
acggaatctggggatgatcggccactctctggttgttcctactcacgtgatggaaacctg
cttgcaaccagctccttgagtggagttgttaagatatggagcatgccaggattgcaaaag
ttctctgccttgaagggacacacagaacgcgccactgatgttacattttcgcctgtgagc
aatcatgtggctacgtcttctgctgaccggacggcaaggttgtggaacactgatggatct
ctcctgaatacttttcaaggccatctggaccgtcttgctcgaatagccttccatccatca
gggaaatacctggggacaaccagctttgacaagacatggagactgtgggatgtagatacc
ggagtagagttgcttcttcaggaagggcatagtagaagtgtctatggaattgccttccac
cctgatggatctttggcagcttcttgcggactagatgctttgacacgtgtttgggacctc
cgtacagggagaagtattcttgccttggaaggccatgtgaagccagtacttggtatcagt
ttttcacctaatggataccatctagcaactggtggtgaggataatacttgtcgaatatgg
gacttaaggaagagaaaatctttatacgtcataccagcacactcgaatctcatatcacaa
ttgaagtttgagcctcaagaaggatacttcttagtgacagggtcgtatgacatgacagtg
aag

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