Citrus x clementina (clementine): CICLE_v10007241mg
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Entry
CICLE_v10007241mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cic
Citrus x clementina (clementine)
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cic03036
]
CICLE_v10007241mg
Chromosome and associated proteins [BR:
cic03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CICLE_v10007241mg
microRNA pathway
RISC loading complex
CICLE_v10007241mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18054308
NCBI-ProteinID:
XP_006453683
UniProt:
V4U256
LinkDB
All DBs
Position
Unknown
AA seq
1564 aa
AA seq
DB search
MEENIIVYLGTGCGKTHIAVLLIYELAHLIRKPQKSICIFLAPTVALVQQQAKVIEESIG
FKVRTFCGGSKRLKSHCDWEKELDQYEVLVMIPQILLYCLYHRFIKMELIALLIFDECHH
AQVKSNHPYAKIMKDFYKPDIMKVPRIFGMTASPVVGKGASTQANLPKSINSLENLLDAK
VYSVEDAEDLESFVSSPVVRVYHYGPVINDTSSSYVTCSEQLAEIKREYISALSRKLHDH
QSLRNTTKQLNRLHDSMKFCLENLGVCGALHASYILLSGDETMRNELIEAEGNTIDDSLY
GIASDLSCIEVLKEPFFSKKLLRLIGILSTFRLQQHMKCIVFVNRIVTARALSYILQNLK
FLASWRCHFLVGVNAGLKSMSRNAMKSILEKFRSGELNLLVATKVGEEGLDIQTCCLVIR
FDLPETVASFIQSRGRARMPQSEYAFLVDSGNQRELDLIKNFSKEEDRMNREIMDRTSSD
AFTCSEERIYKVDSSGACISAGYGVSLLHRYCSKLPHDEFFNPKPKFYYFDDLGGTICHI
ILPANAPIHQIVGTPQSSMEAAKKDACLKAIEDLHKLGALNDYLLPQEDNATEDEPMLFS
SDSDSYEGEGSRGELHEMLVPAVLRQSWTKSQYPVRLNFYFMQFIPDPADRIYREFGLFV
KSLLPGEAEHLKVDLHLARGRSVMTKLVPSGVAEFTKDEIMQAQQFQEMFLKVILDRSEF
NSEFVPLGKDDYCESSSSTFYLLLPVIFHKNSVDWKIIRRCLSSPVFGTPGGSVDRKSLP
SHGPLQLHNGWSSESDVENSLVYATHKKWFYFVTNIVFEKNGYSPYKDSDSLSHVDHLIS
SYGIHLKHPKQPLLRAKPLFRLRNLLHNRKLEDSESHELDEYFDDLPPELCQLKIIGFSK
DIGSSLSLLPSIMHRLENLLVAIELKHLLSASFPEGAEVSAEMLLKALTTEKCQERFSLE
RLEILGDAFLKYAVGRHLFLLHDTVDEGELTRRRSNAVNNSNLLKLAARNNLQVYIRDQP
FDPCQFFALGRRCPRICSKETERTIHSQYDGRAPDDLNAEVRCSKGHHWLHKKTIADVVE
ALVGAFIDDSGFKAATAFLKWIGIQVEFEASQVTNICISSKSFLPLSASLDMATLEILLG
HQFLHRGLLLQAFVHPSFNRLGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLR
SMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLG
DLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFP
SLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLE
SILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQGGNYNSTMYSDSVVASSSPS
ITPLNIRSSFPSKDVRVQPSEIIAGSSCDIGSPSLTTGGLQNRSARSRLYELCAANCWKP
PTFDCCKEEGLSHLKLFTFRVIVEIEAPEKIIECIGEPQAKKKGAAEHAAEGMLWCLERE
GYLY
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaacataattgtatatttgggaacaggatgtggcaagacacatattgctgtg
cttctcatatatgagctcgcacacttgatacgtaaaccccagaagagcatatgtatcttt
cttgctccaactgttgctcttgtccaacagcaagccaaggttatagaagaatctattggc
ttcaaggtcaggactttctgtgggggttcaaagcgcttgaagagccattgtgactgggaa
aaagaactcgaccaatatgaggttcttgttatgatccctcaaatactactttattgttta
tatcaccggtttatcaagatggagctaattgctcttttgatcttcgatgagtgtcatcat
gctcaagtcaagagcaatcatccttatgcaaaaatcatgaaagatttctataaacctgat
attatgaaagttcctcgtatatttggcatgactgcatctcctgtcgtggggaaaggtgca
tcaactcaagcaaatttaccaaaaagcattaacagtcttgaaaatttacttgatgctaag
gtctattcagttgaagatgcggaagatctggaaagttttgtgtcatctcctgtagttaga
gtatatcattatggtcctgttataaacgacacttctagctcctatgtgacttgtagtgag
caacttgcagagataaaacgtgagtacatatcagcacttagtaggaagctgcatgatcat
caaagtcttcgcaacacaacgaagcagctcaaccgattgcatgatagtatgaaattttgt
ttggaaaatcttggagtctgtggagctctgcatgctagttacattcttttgagtggcgac
gagacgatgaggaatgagttaatagaagcagaaggaaataccattgatgactctttatat
ggcattgcttctgatctgtcttgtatagaagtcttaaaggagccatttttctcaaaaaag
cttttgcgtctcattggaattctttccaccttcaggttgcaacaacatatgaagtgtata
gtttttgtaaataggatagttacagcaagagccttgtcttatatactacagaaccttaag
tttctggcttcttggaggtgtcatttcctagttggagtaaatgctggactgaagagtatg
tcacggaatgccatgaaaagcatccttgagaagttccgctctggagagttgaatcttctg
gttgctacaaaagttggtgaagaaggacttgatattcagacatgttgtcttgttatacgg
tttgatcttccggaaactgttgctagctttatacagtccagaggtcgtgctcgaatgcct
caatctgaatatgcatttctagtggacagtggcaaccagagggagctggatcttataaaa
aattttagcaaagaagaggatagaatgaacagggaaatcatggacagaacatctagtgat
gcttttacttgttcagaggaaagaatatataaagttgattcatctggtgcttgcattagt
gctggatatggcgtctctttactccaccgttattgttcaaaacttccgcatgatgagttt
tttaaccccaagccaaaattttattattttgatgatttagggggaactatctgtcacata
attttgcctgctaatgctccaatacatcaaattgttggtacaccacaatcttcaatggaa
gcagctaagaaagatgcttgcctgaaagcaattgaagacttgcataaactgggtgcctta
aatgactatcttctgccacaagaagacaatgcaactgaggatgaaccaatgctgttctct
tctgattctgacagctatgaaggtgagggttcacgaggagaactacatgagatgctagtt
cctgctgtacttagacaatcatggaccaagtcacagtaccctgtccgtcttaatttttac
tttatgcaatttattcctgatcctgcggataggatctatagagagtttggtctttttgtc
aagtcacttctccccggagaggctgagcatctaaaagttgatcttcaccttgctcgtggt
agatctgtgatgacaaagcttgtcccatcaggagttgcggaatttacaaaagatgagatt
atgcaggctcaacaattccaagaaatgttcttaaaagtcatccttgacagatcagaattc
aattctgaatttgttcccttaggaaaagatgattattgtgaatctagctcctcaactttc
tacttgttgcttccagtcatttttcacaaaaattccgtagactggaagatcatcagaaga
tgtttatcatctccagttttcgggactccaggaggttctgtagacagaaaaagtttgcct
tctcatgggccattgcaacttcataatggttggagcagtgaaagtgatgttgagaatagc
ttagtgtatgccacacacaagaagtggttttactttgttacaaacattgtttttgaaaag
aatggctacagcccatataaagattcggattctttaagccatgtggatcacttaattagc
agttatggcattcaccttaaacatcctaaacaacctcttttgcgtgcaaaaccgcttttt
cgcttacgcaacttgctacataacagaaagctggaggactcagaatcacatgaactagat
gagtactttgacgatttgcctcctgagctttgtcaattaaagataatcggcttctctaaa
gatattgggagttcactatctttgttgccgtcaatcatgcaccgactggaaaacttgctt
gtggccatagaactgaagcacttactatctgcctctttccctgagggagctgaagttagt
gctgagatgcttctgaaggcactcaccacagagaagtgccaggagcgcttttcccttgaa
aggcttgaaatacttggtgatgcattcctcaaatatgctgttgggcgacacctttttctt
ttgcacgatactgttgatgagggagagctcactcgaaggcgctcaaatgctgtaaacaat
tccaatttgctcaagctagcagctaggaacaatttacaggtttacatacgtgatcaacca
tttgatccctgccaattctttgctttgggccgtcgttgccctagaatatgtagcaaggaa
acagaaagaactattcattctcaatatgatggtcgtgctccagatgacctaaatgctgaa
gtcagatgtagtaaaggtcaccactggttacataagaaaactatagctgatgtggttgaa
gcccttgtcggagcatttattgatgatagtggcttcaaagctgctactgcatttcttaaa
tggattggcatacaagtggaatttgaagcttcacaagttactaatatatgcatatcgagc
aagagcttcttgccactgagtgcttccttggatatggccacccttgaaattttgttaggg
catcaatttctccatagaggtttgctcttgcaggcttttgtgcatccgtctttcaacagg
cttggaggctgctatcagagattggaattcctaggagatgctgtgctggattacttgatc
acttcatatctatattcagtctatccaaagttaaagcctggtcagttgacagatttgagg
tcaatgttagtgaataatcaagcctttgccaatgttgcagttgatcaatccttctacaaa
tttcttatctttgattccaatgtcctatctgagactataaacaattatgtggactatatg
ataacaccttcatcaacaagggaagtgaaagaagggccaagatgtccaaaggttcttggt
gacttggtagagtcttctttgggagccatcctgcttgattcggggtttaatttgaatact
gtgtggaaaataatgttatcctttttggatccaatcttgaaattttcaaacttgcagctt
aatccaattagggagctactggaactttgcaactcttatgacttggatttgcagtttcct
agcttaaagaagggtggaaaatttttagctgaagcgaaagtagctgtgaaagataaagat
gtttttatatctgcttgtgcaacaaacctgagcagaaaagaagctattaggattgcttcg
caacaattattctcgaagttgaaggctgcaggctatgtgccgaagactaaatcactggag
agtattttgaagtccagccccaagtcggaagccagactgattggatatgatgaaacacct
ataaatgtagttgctgcagatgacaatgtgtttgaaaagttgaagatcagtgaacctcaa
ggcggtaattataactctaccatgtattctgatagtgtggtggctagttcttctccaagc
attacaccactcaatatacgctcatcattcccctctaaagatgtaagagtacagccaagt
gagatcattgcaggttctagttgtgacattgggtctccaagtctgaccacaggcgggttg
cagaatagatcagcaagatcacgcttgtatgaactttgtgctgctaattgttggaaacct
ccgacttttgattgttgtaaagaggaaggtctcagccatttgaaattgttcactttcaga
gttatagtggaaatagaagcccctgaaaaaattatagagtgcattggggaacctcaggca
aaaaagaaaggtgcagctgaacatgcagcagaagggatgctctggtgtttggaacgtgaa
ggttacttgtactag
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integrated database retrieval system
