Citrus x clementina (clementine): CICLE_v10007291mg
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Entry
CICLE_v10007291mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CICLE_v10007291mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cic03400
]
CICLE_v10007291mg
DNA repair and recombination proteins [BR:
cic03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CICLE_v10007291mg
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
18055846
NCBI-ProteinID:
XP_006451109
UniProt:
V4WD14
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MQRQQSIHSFFQKCSPANKSGAADMSGARKDSNFTTKQRNPVGDSSGQPTVSATEDSSLE
IRGTDTPPEKVPRQILPSGFKANEGTSGGSSLFSSIMHKFVKVDARQNANKRNEQHGNSS
TVCSVFGKTGDLEASSQQGTASLYSEKDNVFNCNGLANQGCVSCTEMNEDVSGPDTPGMH
RVVPRLKRILEDNLNIGDKKNSSLLDSSKRMRLLQDSVAGVKNCEEEADTTSKFEWLDPS
KIRDANRRRPDDPLYDKRTLYIPPEALKKMSASQKQYWNVKSQYMDVLLFFKVGKFYELY
ELDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVEKLVARGYKVGRIEQLETSEQAK
ARHTNSVISRKLVNVVTPSTTVDGTIGPDAVHLLAIKEGNCGPDNGSVVYGFAFVDCAAL
RVWVGTINDDASCAALGALLMQVSPKEVIYENRGLCKEAQKALRKFSAGSAALELTPAMA
VTDFLDASEVKKLVQLNGYFNGSSSPWSKALENVMQHDIGFSALGGLISHLSRLMLDDVL
RNGDILPYKVYRDCLRMDGQTLVNLEIFNNNADSGSSGTLFKYLDSCVTSSGKRLLRSWI
CHPLKDVEGINNRLDVVEYLMKNSEVVMVVAQYLRKLPDLERLLGRVKARVQASSCIVLP
LIGKKVLKQQVKVFGSLVKGLRIAMDLLMLMHKEGHIIPSLSRIFKPPIFDGSDGLDKFL
TQFEAAIDSDFPDYQNHDVTDLDAETLSILIELFIEKASQWSEVIHAISCIDVLRSFAVT
ASMSSGAMHRPLILPQSKNPAVRKDNGGPVLKIKGLWHPFALGENGGLPVPNDILLGEDS
DDCLPRTLLLTGPNMGGKSTLLRATCLAVILAQLGCFVPCEMCVLSLADTIFTRLGATDR
IMTGESTFLVECTETASVLQKATQDSLVILDELGRGTSTFDGYAIAYAVFRQLVERINCR
LLFATHYHPLTKEFASHPHVTLQHMACAFKSNSENYSKGDQELVFLYRLTSGACPESYGL
QVAVMAGVPQKVVEAASHAALAMKKSIGESFKSSEQRSEFSSLHEEWLKTIVNVSRVDCN
SDDDDAYDTLFCLWHELKNSYQLHN
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcaacaatcgatccactccttctttcagaaatgctcgccggcgaacaaatct
ggcgccgcagacatgtcaggcgcccggaaagactccaattttacgacaaagcagcggaat
ccagtcggtgactcctccggtcaacctacagtttctgctacggaggactcctctctggaa
atcagaggaaccgacactccaccggaaaaagtgccacgtcagattctaccgtcgggcttt
aaggcgaatgaggggaccagtggaggttcttcactgttttcgagcattatgcataagttt
gtgaaggttgatgcaagacaaaacgcaaataaaaggaatgaacagcatggaaattcctct
actgtttgctcagtgtttggtaaaactggtgatctggaagcatcatctcaacagggaaca
gcttctctatattctgaaaaagacaatgttttcaattgtaatggcttggccaaccaagga
tgtgtttcatgtactgaaatgaatgaagatgtttctggtccagatacaccgggcatgcat
cgtgttgttcctcgtctaaagcggattttagaagataatctcaacattggggacaagaag
aactcttcattgctggattctagtaaaagaatgagacttcttcaggattccgtggctggg
gttaagaactgtgaggaagaagctgatacaaccagcaagtttgaatggcttgatccttct
aaaattagggatgccaacagaagaaggcctgatgatcccctttatgacaagaggacactt
tatataccacctgaagctttgaagaaaatgtccgcatctcaaaagcaatactggaatgtc
aaatcccaatatatggatgttttgcttttctttaaagtggggaaattctacgagctctat
gaactggatgctgaaattggtcacaaagagcttgattggaagattacattaagcggtgta
gggaaatgtcgacaggttggtatctccgagagtgggattgatgatgctgttgaaaaacta
gttgctcggggatataaagttggacggattgagcagttggagacatctgaacaagcaaaa
gcaagacatacaaactctgtaatttctagaaaattagtgaatgttgtcacaccgtcaacc
acagtagatggtacgattggccctgatgctgttcatcttcttgctataaaagaggggaac
tgtgggccagataatggttctgttgtctatggatttgcttttgttgattgtgctgctctg
agggtctgggttggcaccatcaatgatgatgcttcatgtgctgctttgggggctttattg
atgcaagtatcacctaaagaagtaatatatgaaaatagagggctttgcaaagaagctcag
aaagcgctgagaaagttctcagcaggttctgcagctttggaactcactccggctatggca
gttactgattttttggatgcttctgaagttaaaaaattggttcagttgaacggttacttc
aatgggtcttcaagtccatggagtaaggcactcgaaaacgtaatgcaacatgatatcggg
ttctctgctctaggtggacttataagtcatttatccaggttgatgttggatgatgtttta
cgaaatggagatatattaccttacaaagtttatagagattgccttagaatggatggacag
acactggtaaatcttgagatatttaataacaatgctgacagtggttcatcaggtacattg
ttcaagtatcttgatagctgtgtgacatcatctggtaagcggcttttgcggagttggatc
tgccatccactaaaagatgttgaaggcattaataacaggctggacgttgttgaatatcta
atgaaaaattcagaagttgtgatggttgttgctcagtatctgcgcaagctccctgacttg
gagaggctgctgggaagggtgaaagctagagttcaggcatcatcgtgtattgtattgccc
ttaataggcaagaaagtattgaaacagcaagtgaaagtatttgggtctcttgtgaaagga
cttaggattgcaatggatttattaatgttaatgcacaaggaagggcatataattccgtca
ctatctagaatttttaaaccgccaatattcgatggtagtgatgggctggataaattcctt
actcagtttgaagcagcaattgatagcgacttccctgattaccagaaccatgatgtaaca
gatttggatgcagaaacactgtcaattctgattgagttattcattgagaaagctagtcaa
tggtctgaagttattcatgctattagttgtatcgatgtattaagatcttttgctgttact
gcgagcatgtcatctggtgctatgcatagacctcttattttgcctcaatcaaaaaatccg
gctgtgaggaaagacaatggaggacctgtacttaaaattaaaggattgtggcatccgttt
gcacttggagagaatggaggactaccggtcccaaatgacattcttcttggtgaagattca
gatgactgtcttccccgtaccttgctattgactggacctaatatgggtggaaaatcaaca
cttctgcgtgccacatgtttagctgtaatactggctcagctgggctgttttgttccttgc
gagatgtgtgttctctctcttgcggataccatttttacacggcttggtgccactgataga
atcatgacaggagagagtacatttcttgttgagtgcacagagacggcatcagttcttcag
aaagccactcaagattctctggtaattcttgatgaactgggtcgaggaacaagcactttt
gatggatatgccattgcctacgctgtattccgccaacttgttgaaaggatcaattgtcgg
ttgctatttgcaacacattaccatccactcacaaaagaatttgcttctcatccgcatgtt
actctacaacatatggcttgtgctttcaagtcaaactctgaaaactattcgaaaggtgat
caagagctggtttttctctaccgccttacttccggagcatgcccagagagctatgggttg
caagtggctgtaatggctggggttccacaaaaggtggttgaggcagcatcacatgctgct
ctagcaatgaaaaaatcaataggagaaagtttcaagtcgagtgaacagagatcagagttc
tcaagtctccatgaagagtggttgaagaccattgtaaatgtctcaagggttgattgtaat
tccgatgatgatgatgcttatgacacattgttttgtttgtggcatgagctaaagaattca
tatcagttgcacaactaa
DBGET
integrated database retrieval system
