Citrus x clementina (clementine): CICLE_v10007611mg
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Entry
CICLE_v10007611mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CICLE_v10007611mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10007611mg
Enzymes [BR:
cic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
CICLE_v10007611mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
CICLE_v10007611mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
18055153
NCBI-ProteinID:
XP_006452602
UniProt:
V4UIA3
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MKKRWPITILYRAFSSSTTSTTASFPLKHVKKSNFDSALSSLRHHVQAADFVAIDLEMTG
ITSAPWRDSFEFDRFDVRYLKVKDSAEKFAVIQFGVSPFRWDPLKQSFITHPHNFFIFQR
QELPLDGAAYEFLCQTTSMDFLAKYQFDFNACIHEGVSYLSREQEDKALKHVNSTYEDES
LDSWHSLKEIRDTHLFNIPDILFAERMKDRLSEWLGGLLRNRDGGSEVQPSFNDSKQQFE
TIFFKMRPAISLNGFTSHQLLLIQLVVRKHFKDLAYLRVSGENSCSQNVIVYIESESDKK
MLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPL
TAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHL
ALQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLA
HNEKLREHVNLLYLSWTNGEIINLSTGNRTSESLASNKRKNHYPKILFECIVIVWGFPSH
LKAWDIRECISKVYGPTSVISVYHVDETAVFVQFSRAEMVSKFLDLKGSLDRNNDPISVL
HPLAKLLEGGNTCAASYETYKEICSSTVSKVLFADQAKAVGIKWKTKLVESSDKTKEHES
LRKVKAVNSDPSCGERTKNKNFDDVSNDSSYSQLSSDEIIDSFYTREAKQI
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacgatggccgattacgattctctatcgcgccttcagctcttcgacgacgtcg
acgacggcgtcgtttcctctaaaacacgtgaagaaatcaaacttcgactcggcgctcagc
tcgcttcgccaccacgtccaggccgctgatttcgttgcaatcgacctcgaaatgaccggc
atcaccagcgcgccgtggcgcgactccttcgagtttgaccgattcgatgttcgctacctc
aaggtaaaagattccgccgagaagttcgccgtcattcagttcggtgtatcgccctttcgc
tgggacccactcaagcagtccttcatcacccatccacacaatttctttatatttcaacgt
caagagcttccacttgatggtgctgcttatgaattcctttgtcagacaacatcaatggat
ttcttggccaaataccagtttgatttcaatgcctgcattcatgaaggtgtatcttattta
tccagagaacaagaagataaagctcttaaacatgtgaattcaacatatgaggatgagtca
ttggattcatggcatagtctaaaggaaattagagatactcatttgttcaacatacctgat
atcctctttgccgaaagaatgaaggacagattgagtgaatggcttggtggattgttgcgg
aatagagatggaggttctgaagttcaaccaagttttaatgactcgaagcagcagtttgaa
accattttcttcaagatgcgtcctgcgattagtctgaatggtttcacttctcatcaactt
ctgttgattcaattggttgtaagaaagcatttcaaagatcttgcttatcttcgtgtcagt
ggggaaaattcttgttcacaaaacgttatagtgtatatagagtcagaaagtgacaaaaag
atgctgatgaaagaagtgaaggatgaacaaaaaatagatgcagagatgagcatcaaagct
tctattggatttcgccatgttattgacttgctttcctcagagaagaagttgattgttggt
cacaattgcttccttgatattgcacatatttacagcaaattctttggtcctcttcctttg
actgctgaagaattcatttcctctgttaacaaatactttccgcacatcattgataccaaa
atattgttgaattcaaattctattcttcaacaaaggatgaagaaatctagcacttcattg
tccaaggcattttctgttttgtgtccacaaattgctcttggctctaaaagcacccatctg
gctcttcagccgtctgtgaaagtagaggttgaagtggatgatataaggtcatccaactgg
aactctggagtgaagcatgaagctggatatgatgcttttatgactgggtgcgtctttgct
caagcatgcagtcaccttggtattgattttaaacaacagtcatcctctgaaaatttagct
cacaatgaaaagctccgggaacacgtcaaccttctgtatctcagttggactaatggagag
attatcaatctaagcactggaaataggacttctgagtctttggcctctaataagcgcaaa
aaccactacccaaagattttatttgagtgtattgttatagtatggggattcccatctcac
ctcaaggcttgggacattagagaatgcatctctaaagtctatggccctacctcagtgatt
tcagtctatcatgtggatgaaactgcagttttcgtgcagttcagcagggcagaaatggtt
tccaaatttcttgatttgaagggaagcttagatagaaataacgatccaatctcggttttg
catcctcttgcaaaattgctcgaaggtggaaatacctgtgctgctagctatgaaacttac
aaagaaatatgtagttcaactgtctcaaaagtcttatttgcggatcaagcaaaggcagtt
ggtatcaaatggaagaccaagttggtggaatcctcggataagaccaaagaacatgaaagt
ctccgtaaagtaaaagcagtgaattctgatccaagttgtggtgaaagaactaagaataag
aattttgatgatgtatcaaatgattcatcatacagccaattatcatctgatgagatcatt
gattccttttatacgcgggaggcaaagcagatttga
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