Citrus x clementina (clementine): CICLE_v10008383mg
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Entry
CICLE_v10008383mg CDS
T02982
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cic
Citrus x clementina (clementine)
Pathway
cic03013
Nucleocytoplasmic transport
cic03015
mRNA surveillance pathway
cic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CICLE_v10008383mg
09122 Translation
03013 Nucleocytoplasmic transport
CICLE_v10008383mg
03015 mRNA surveillance pathway
CICLE_v10008383mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cic03019
]
CICLE_v10008383mg
03041 Spliceosome [BR:
cic03041
]
CICLE_v10008383mg
Enzymes [BR:
cic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CICLE_v10008383mg
Messenger RNA biogenesis [BR:
cic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CICLE_v10008383mg
Spliceosome [BR:
cic03041
]
Complex C
Other components
EJC/TREX
CICLE_v10008383mg
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CICLE_v10008383mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
18054679
NCBI-ProteinID:
XP_006450446
UniProt:
V4UMU7
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MGETRDNEYEDELLDYEEEDAQAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVSKFMFLLIGSFQCLVL
GSF
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgggagagacaagagacaacgagtacgaggatgagcttctcgactacgaggaagaagat
gctcaagctcccgattccgtcgctaccaaagcaaacggcgaagccgccaagaagggctat
gttggtatacacagttcaggattcagagactttcttttgaagccggaacttcttcgtgca
attgtggactcaggatttgagcatccttcagaagtgcaacatgaatgcatacctcaagcg
attctgggcatggatgttatttgccaagctaaatcagggatggggaagactgctgtgttt
gttctgtcaactcttcagcaaacagagccaaatccaggccaagttactgcacttgtttta
tgtcacactagagagttagcttatcagatctgccatgagtttgagaggttcagtacttac
ctgcctgatatcaaggttgctgtcttttatggtggagttaatataaaaattcacaaagat
ttgctgaaaaacgaatgtccccaaattgttgttgggactcctggaaggatactagctctt
gctagagataaagacctctctttgaagaatgtgaggcattttatccttgatgaatgcgat
aagatgctggaatctcttgacatgagaagagatgtgcaagagattttcaagatgactcct
catgacaagcaagtaatgatgttttcagcaacactcagcaaggaaatccgcccagtctgc
aagaaatttatgcaagatccaatggaaatttatgtggatgacgaggcaaagttgactctt
catggtcttgtacagcactacatcaaattgagtgagctggagaaaaatcggaagttgaat
gatctccttgatgcattggactttaatcaagttgttatctttgtcaaaagtgttagccga
gcagcggagttaaacaagttacttgtagaatgcaattttccttctatatgcatccattct
ggcatgtcccaagaagaaaggttgacgcgttacaaaggtttcaaggaggggaacaagagg
attcttgtggccacagatttggttggtaggggaattgacattgagcgtgtcaacattgtc
atcaattatgacatgccagattctgctgatacttatctgcacagggttggtagagctggt
aggtttggcaccaagggccttgcaattacttttgtatcatctgcttcagactccgatatt
ctcaatcaggtttcaaaattcatgttcttattgattggttcttttcaatgtttggttttg
ggcagtttttaa
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