KEGG   Citrus x clementina (clementine): CICLE_v10009035mg
Entry
CICLE_v10009035mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03022  Basal transcription factors
cic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CICLE_v10009035mg
  09124 Replication and repair
   03420 Nucleotide excision repair
    CICLE_v10009035mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cic03021]
    CICLE_v10009035mg
   03400 DNA repair and recombination proteins [BR:cic03400]
    CICLE_v10009035mg
Transcription machinery [BR:cic03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CICLE_v10009035mg
DNA repair and recombination proteins [BR:cic03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CICLE_v10009035mg
SSDB
Motif
Pfam: Tfb2 MetRS-N SPEF2_D5
Other DBs
NCBI-GeneID: 18055861
NCBI-ProteinID: XP_006451124
UniProt: V4WD26
LinkDB
Position
Unknown
AA seq 301 aa
MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA
KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPR
EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQR
DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY
NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEVCCLRN
H
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccgcaggtgaagatcatagcgaaaaatttcatggacatggtggcgtcactgactgcc
agagacctcaataagctctacgagaatcccttcatttgcgaagccattctcaggtcactg
ccaccactagcaaagaagtatgtattccaaatgttgtatattgatggtgcaataccggct
aagacgatggaggagtgggtgcttcccgatgggttcactaagcacaaagtagccatcgat
cggttggttcagttgagattattttcagaggaaaagaagaaggaaaccacttatagatta
aattcaacattccagtctaatctccagaagcatttaataaatggtggagctttgccaagg
gaaccaatgccttctggtattactgcaaggcttccaaccttggaggaccttgaggcctat
gccattggacaatgggagtgtttcttgctgcaacttattagttcagcccaagctgaaagg
ccgacaaatttcagctcttccatgatgaaggttttccagcgtggtcttttgattcaaagg
gataaagaagccccaaggttaacagagagtggttttcaatttttgctgatggatactaat
gcacagctctggtacatcgttagagaatatatctccaattcccaggaacgaggcataaat
caagcagatctgatttcttttcttctggagcttagtttccatgtcgctggggaggcatat
aatttaaatacactgagtgaaatacaaagaagtatgatcaaagactttgcagacttggga
ttggtcaaacttcagcagggcaggaaagaaagttggtttatacctactaaattagctacc
aatctttcaatgagcttaactgattcatcagcacggaaagaggtatgctgtttgagaaat
cattga

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